Dickeya fangzhongdai DSM 101947: CVE23_03625
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Entry
CVE23_03625 CDS
T05277
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Pathway
dfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVE23_03625 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfn03019
]
CVE23_03625 (pnp)
03016 Transfer RNA biogenesis [BR:
dfn03016
]
CVE23_03625 (pnp)
Enzymes [BR:
dfn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CVE23_03625 (pnp)
Messenger RNA biogenesis [BR:
dfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CVE23_03625 (pnp)
Transfer RNA biogenesis [BR:
dfn03016
]
Prokaryotic type
tRNA degradation factors
CVE23_03625 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_PDCD11
S1_2
KH_2
OB_RRP5_4th
aRib
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Spt6_S1
DUF4172
Motif
Other DBs
NCBI-ProteinID:
ATZ96546
UniProt:
A0A2K8QSZ3
LinkDB
All DBs
Position
758056..760176
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AA seq
706 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKQAKPGQDFFPLT
VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA
GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPEVNV
ELHNRVQALSEVRLGDAYRITEKQERYAQVDTIKSDVVAALLAEDDTLDENELRDILGSI
EKNVVRSRVLSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQIIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEA
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISSPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEANAQSQETVPVSEEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgttcgtaaattccagtacggtcagcataccgtgacactggaaacc
ggcatgatggctcgtcaggcaactgccgccgtgatggtcagcatggatgacaccgcggta
ttcgtgaccgtggtaggtgccaaacaggccaaaccgggtcaggactttttcccgctgacc
gttaactatcaggagcgtacctacgctgctggccgcatccccggtggtttcttccgtcgc
gaaggccgtccgagcgaaggcgaaactctgatttcccgtctgatcgaccgtccgattcgt
ccgctgttcccggatggtttcgttaatgaagtgcaggttatcgccaccgtagtttccgtt
aatccgcaggttaacccggatatcgtcgccatgatcggtgcttccgctgcgctgagtctg
tccggcattccgttcaacggcccgattggcgcggctcgcgttggttacatcaacgaccag
tatgtgctgaacccgactaccgaagaactgaaaaccagccgtctggatctggtggttgcc
ggtaccgaaggcgcggtgctgatggttgaatccgaagcggatctgctgagcgaagatcag
atgctgggcgcggtagtgttcggtcacgatcagcagcagattgttatcgaaaacatcaag
tcgctgacggcggaagccggcaagccgaagtggaactggcaggcgccggaagttaatgtc
gaactgcacaaccgtgtgcaggcgctgtctgaagtccgtctgggcgatgcctatcgcatc
accgaaaaacaggagcgttacgctcaggttgataccatcaaatccgacgtggttgcggcg
ttgctggcggaagatgacacgctggacgagaatgaactgcgcgatattctcggcagcatc
gagaagaatgtggtgcgtagccgtgtcctgagcggcgaaccgcgtatcgacggtcgtgaa
aaagacatgatacgtggtctggacgttcgtaccggcgtactgccgcgtactcacggttcc
gctttgttcacccgtggtgaaactcaggcgctggtgaccgcgacgctgggtaccgagcgc
gacgcgcagattattgacgaattgaccggcgaacgtaccgatcgtttcctgctgcactac
aacttcccgccgtactccgtgggcgaaaccggtatggtcggttcgccgaaacgccgcgaa
atcggccacggtcgtctggctaaacgtggtgtgctggctgtgatgccgaaaccggaagcc
ttcccgtacaccgtacgtgtggtatccgaaatcactgagtccaacggttcttcttctatg
gcgtccgtatgcggcgcgtcgctggcgctgatggatgccggtgtgccgatcaaggctgcc
gttgccggtatcgcgatgggtctggtgaaggaaggcgacaacttcgtggttctgtctgac
attctgggtgacgaagaccacctgggcgacatggacttcaaagtagctggtagccgtgaa
ggcgtgaccgcgctgcagatggacatcaaaatcgaaggtatcacccgcgaaatcatgcag
gtggcgctgaatcaggccaagggtgcgcgtctgcacattctgggcgtgatggaacaggcg
attagctcgccgcgtggcgatatctccgaattcgcaccgcgtattcacaccatcaagatc
agcaccgacaagatcaaagatgtgattggtaaaggtggttcggtgatccgtgcgttgacc
gaagaaaccggtactaccatcgagatcgaagatgacggcacggtgaaaatcgcatcgacc
gacggcgaaaaagcgaaacatgccattcgtcgtatcgaagagatcacggctgaaatcgaa
gtgggccgtatctatcagggcaaagtgacccgtatcgttgactttggcgcctttgtagcc
atcggcggcggtaaagaaggtctggtacatatttctcagatcgccgacaagcgcgttgag
aaagtgaccgactatctgcagatgggccaggaagtgccggttaaggtactggaagtggac
cgtcagggtcgtatccgtttgagcataaaagaagcaaatgctcaatctcaggaaactgtt
ccggtttccgaggaagaataa
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