Dickeya fangzhongdai DSM 101947: CVE23_03840
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Entry
CVE23_03840 CDS
T05277
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Pathway
dfn03410
Base excision repair
dfn03430
Mismatch repair
dfn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CVE23_03840
03430 Mismatch repair
CVE23_03840
03440 Homologous recombination
CVE23_03840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfn03400
]
CVE23_03840
DNA repair and recombination proteins [BR:
dfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CVE23_03840
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CVE23_03840
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CVE23_03840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Terminase_6
Motif
Other DBs
NCBI-ProteinID:
ATZ93183
UniProt:
A0A2K8QI55
LinkDB
All DBs
Position
803677..805407
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AA seq
576 aa
AA seq
DB search
MNVVTQLRRRPTTETELPDSLPVLLRRLYAQRGVRQMQELERSLRGLLDYRLLGGIEQAV
EVLRQALADNRRIVIVGDFDADGATSTALTVLALRSMGGREIQYLVPNRFEDGYGLSPEV
VAQAAAKGAELIVTVDNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSD
CAFPSKALAGVGVAFYLMMALFVRLRDAGWFAERGLAVPNLTELLDLVALGTVADVVPLD
ANNRILVSQGLSRIRAGKCRPGIRALLEVSNRDAVQLVASDLGFALGPRLNAAGRLDDMS
VGVELLLCNDIVQARMLASDLDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMY
HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPG
LMLKFGGHAMAAGLSLVEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELAIPELTLGT
AEMLREAGPWGQAFPEPTFDGRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLL
WPDSSVREVELAYKLDVNEFRGKRSVQLLIEHLWPL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgttgttacccaactccgtcgtcgcccgacgacggagacagagttacccgactcc
ctccccgttttgctgcgtcgtttatacgcccagcgcggcgtacgacagatgcaggagctt
gagcgcagtctgcgcggtctgctggattaccgtctgcttggcggcattgagcaggcggta
gaggtgttacgtcaggcgctggcggacaaccgtcgcatcgtgatcgtcggcgatttcgac
gccgacggcgccaccagcaccgcgcttacggtgctggcgctgcgcagcatgggcggccgc
gagattcagtatctggtgcccaaccggtttgaggacggctacgggctcagcccggaagtg
gtggcgcaggccgccgccaaaggcgcggagctgatcgtgaccgtcgataacggcatttcg
tcgcacgccggggtggacgatgcgcaccggcgcggcatcgcggtggtggtgaccgaccac
catctgccgggggaaaccctgccggcggccgaggcgatgatcaaccccaacctgtcggat
tgcgcgtttccgtcgaaagcgctggcgggcgtcggggtggcgttctatttaatgatggcg
ctgttcgtgcgcctgcgcgacgccggctggtttgccgaacgcggtctcgccgtccccaat
ttgacggaactgttggatctggtggcgctgggcacggtggcggatgtggtgccgctggat
gccaacaaccgtattctggtttcgcagggattaagccggattcgcgccggcaaatgccga
ccggggattcgcgccctgctggaagtgtccaaccgcgacgccgttcaactggtggcgagc
gatttgggctttgcgctggggccgcgtcttaatgccgcgggacggctggacgacatgtcc
gtcggcgtagaactgttgttatgcaacgacatcgtgcaagcgcggatgctggccagcgat
ctggatgcgctgaaccaaagtcgccgtgaaatcgaagccggcatgcaggtggaagcgctg
catttgtgcgaacaactggagcgcagccgcgacacgctgccgctggggctggcgatgtac
cacccggagtggcatcagggcgtggtggggattctggcgtcgcgcatcaaggagcgtttt
caccgcccggtgatcgcgtttgcgcctgcgggcgacggtattctgaaaggttccgggcgg
tctatcgccgggctgcatctgcgcgacgcgctggagcgccttgatacctgtcaccccggt
ctgatgttgaagttcggcggccacgcgatggcggcgggattgtcgctggtggaagaccgt
tttgacgagtttcgccagcgttttgccgatctggtgggcgagtggctggatgcgtcgcaa
ctggaaggcgtcgtctggtccgacggcgaactggcgatccctgaactgacgctcggcacc
gctgaaatgctgcgtgaagcggggccgtgggggcaggcgtttccggagccgaccttcgac
gggcgttttcggctgttgcagcaacgactggtcggcgagcgccacctcaaggtgatggtg
gaaccgctgggcggcggcccgctgctggacggcatcgctttcaacgtcgacaccttgttg
tggcctgacagcagcgtgcgcgaagttgaactggcttacaaactggacgtcaacgaattc
cgcggcaaacgctcggtacaactgctgatcgaacacctgtggccgctgtag
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