Dickeya fangzhongdai DSM 101947: CVE23_08995
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Entry
CVE23_08995 CDS
T05277
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
dfn
Dickeya fangzhongdai DSM 101947
Pathway
dfn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CVE23_08995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfn03400
]
CVE23_08995
DNA repair and recombination proteins [BR:
dfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CVE23_08995
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CVE23_08995
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
AAA_30
UvrD-helicase
UB2H
AAA_22
DUF87
Motif
Other DBs
NCBI-ProteinID:
ATZ94085
UniProt:
A0A2K8QLZ8
LinkDB
All DBs
Position
1983640..1985652
Genome browser
AA seq
670 aa
AA seq
DB search
MSKAFKLHSDFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MVLAPNKTLAAQLYGEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQ
YARNDQAFSRGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQTVPR
YTIYPKTHYVTPRERILQAMEEIKVELAERRQVLLAGNKLLEEQRLAQRTTFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLD
PELEVRPVTTQVDDLLSEIRKRSVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYADKITPSMERAMNETLRRREKQQAYNEQHGIVPQGLNKKIGDILQIG
QPTNGRGKGRGKKAAEPAAHYQQLSPKALDQKIRELESQMLAHAQNLEFEEAARLRDEIH
ALREQFIAAS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagcgttcaaactgcattctgatttcaaacccgccggcgatcagcccgaggcg
atacgccgcctggaagaagggctggaagacggactggcgcaccagacgctgctgggggta
acggggtccggtaaaacgttcaccatcgccaacgtgattgccgacctcaaccggccgacg
atggtgctggcgcccaacaagacgctggcggcgcagctgtatggcgagatgaaagcgttt
tttccggataatgcggtggagtatttcgtctcttactacgactactaccagcccgaagcc
tacgtgccgagttcggacaccttcattgagaaggacgcctcggtcaacgaacacatcgaa
cagatgcgattatccgccaccaaggcgctgctggagcggcgcgacgtggtggtggtggcg
tcggtgtccgccatttacggtctgggtgacccggacttgtatctaaagatgatgctgcac
ctgactcagggcatgctgatcgaccagcgcgccatcctgcggcggctggcggagttgcag
tacgcccgcaacgatcaggcgttttcgcgcggcacctttcgcgtgcgcggcgagatcatc
gatatttttccggcggaatctgaagacatcgccctgcgggtggaactgttcgacgaagaa
gtggagcggctgtcgctgttcgacccgctcaccggacatattgtgcagacggtgccgcgt
tacaccatctaccccaaaacccactacgtcacgccgcgcgaacgcatcctgcaggcgatg
gaagagatcaaggttgagctggcggagcgccgtcaggtgctgctcgccggcaataagttg
ttggaagaacagcggctggcgcagcgcaccaccttcgatctggagatgatgaatgagctg
ggctattgctccggcattgaaaactactcccgctttctgtccggccgcgggccgggcgaa
ccgccgccgacgctgttcgattacctgccggccgacggtctgctggtgatcgacgaatcc
cacgtcaccattccgcaactgggcggcatgtaccgcggcgaccgggcgcgcaaggaaacg
ctggtagagtacggttttcgcctgccgtcggcgctggacaaccggccgatgaaattcgag
gagttcgaagcgctggcgccgcagaccatctatgtgtcggcgacgccgggcaattacgag
ctggaaaaatccggcggcgaggtgatcgatcaggtggtgcggccgaccggtctgctggac
ccggaactggaagtccgcccggtgaccacccaggtggatgacttgctgtcggaaattcgt
aaacgttccgtcatcaacgagcgcgtgctggtcaccaccctgaccaagcggatggcggaa
gacctgaccgagtatctggaagagcacggcgagcgggtacgttatctgcactctgatatt
gataccgtggagcgggtggagatcatccgcgatttgcgtctgggcgagttcgacgtgctg
gtgggcatcaacctgttgcgtgaaggtctggacatgccggaagtgtcgctggtggcgatt
ctggatgccgataaggaagggttcctgcgttcggaacgatcgctgattcagaccatcggc
cgggcggcgcgtaatcttaacggcaaggcgattttgtatgccgacaagattacgccgtcg
atggaacgtgccatgaatgagactctgcgccgtcgcgagaaacagcaggcgtacaacgaa
caacatggcatcgtgccgcaggggcttaacaagaagattggcgacatcctgcagattggt
cagccgactaacggccggggcaaagggcgcggcaagaaagcggccgaaccggcggcgcat
taccagcaactgtcgccaaaagcgctggatcaaaaaatccgcgagctggaaagtcagatg
ctggcccatgcgcagaatctggaattcgaggaagccgcccggctgcgcgacgagattcac
gcgctgcgcgaacagtttatcgccgcgtcatga
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