Dickeya fangzhongdai DSM 101947: CVE23_11080
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Entry
CVE23_11080 CDS
T05277
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfn03032
]
CVE23_11080 (topA)
03400 DNA repair and recombination proteins [BR:
dfn03400
]
CVE23_11080 (topA)
Enzymes [BR:
dfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CVE23_11080 (topA)
DNA replication proteins [BR:
dfn03032
]
Prokaryotic type
DNA Topoisomerases
CVE23_11080 (topA)
DNA repair and recombination proteins [BR:
dfn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CVE23_11080 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
E217_gp28
Toprim_2
Toprim_4
CK_II_beta
Zn_ribbon_IS1595
DUF7351
Motif
Other DBs
NCBI-ProteinID:
ATZ94469
UniProt:
A0A2K8QLR8
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Position
2455024..2457627
Genome browser
AA seq
867 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSGSASKKSAEANGEKAKKA
VKKDEKTALVNRMGVDPYRGWQAQYEILPGKEKVVSELKTLAQNAEHVYLATDLDREGEA
IAWHLREIIGGDDTRFSRVVFNEITKNAIRQAFDNPGELNINRVNAQQARRFMDRVVGYM
VSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELHADLLANPEIALQMQV
THHNGKPFRPVNQAQTQAAVSLLEKASYVVAEREDKPTSSKPGAPFITSTLQQAASTRLG
FGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALAMARDYIHDEFGKRYLPEAPNLYTSK
ENSQEAHEAIRPSDVKVLADQLKDMEADAQKLYQLIWRQFVACQMMPAQYDSTTLVVSAG
DYQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPAVDVGQSLSLEKLLPSQHFTKPPARYS
EASLVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEDNFRELM
NYDFTARMENSLDLVANSQAEWKAVLDEFFAEFSKQLETAELEPDEGGMKPNQMVLTSID
CPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLIPEAEVLNVLEGDEAETNALRA
RRRCPKCGTAMDSYLIDNQRKLHVCGNNPSCDGYEIEQGEFRLKGYDGPVVECEKCGSEM
HLKMGRFGKYMACTNESCGNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAG
VFLAANTFPKSRETRAPLVEELVRFRDRLPEKLRYLAEAPVVDPEGNKTLVRFSRKTKQQ
YVSSEKEGKATGWSAFYVDGKWVESSR
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgtcgagtccccggcaaaagccaaaacgattaataagtac
cttggcaatgattacgtggtgaaatccagcgtggggcatgtacgcgacttgccgaccagc
ggctccggttcggcgagcaagaaaagcgctgaggccaacggggaaaaagccaaaaaagca
gtcaagaaagatgaaaaaaccgcgctggtcaaccgcatgggggtggatccctatcgcggc
tggcaggctcagtatgagattctgcccggcaaggaaaaagtcgtatcggaactgaaaacg
ctggcgcagaacgccgagcacgtctatctcgcaaccgaccttgaccgcgaaggggaagcc
attgcctggcacctgcgggaaatcatcggtggcgacgatacgcgtttcagccgcgtggtg
ttcaacgagatcaccaaaaacgctattcgccaggcgttcgacaatccgggcgaactgaat
atcaaccgtgtcaatgcccagcaggcccgccgtttcatggaccgcgtggtgggttacatg
gtatcgccgctgctgtggaaaaaaattgcccgtgggctgtccgccggtcgcgtacagtca
gtggcggtacgtctggtggtggagcgcgagcgcgaaatcaaagcgtttgtgccggaagaa
tactgggaattgcacgccgatttgctggcgaacccggaaatcgcgctgcagatgcaggta
acacaccacaacggcaaaccgttccggccggtgaatcaggctcagacgcaagcggcggtc
agcctgctggaaaaagccagctatgtagtggccgagcgggaagacaaaccgaccagcagc
aaaccgggcgcgccgtttattacttctactctgcagcaggccgccagtacccgtctgggc
ttcggcgtgaaaaagaccatgatgatggcgcaacggttgtatgaagccggccatatcact
tacatgcgtaccgactccaccaacctgagtcaggatgcgctggcgatggcgcgtgattat
atccatgacgaatttggcaaacgctatctgccggaagcgcccaacctttacaccagcaag
gaaaactcgcaggaagcgcacgaagccattcgtccttccgatgtgaaggtgctggccgac
cagctcaaagacatggaagcggatgcgcaaaagctgtatcaactgatttggcggcagttt
gtggcctgtcagatgatgccggcccaatacgattccaccacgctggtggtcagcgccggc
gactatcagctgcgtgccaaagggcgcactctgcgcttcgacggctggaccaaggtgatg
ccggcgttgcgtaagggcgatgaagaccgcacgttgccggccgtcgacgtggggcaatcc
ctgtcgctggaaaaactgttgccaagtcagcactttaccaaaccgccagcgcgttacagc
gaagcatcgctggtcaaggagctggaaaagcgcggtatcggccgtccttccacgtatgcc
gccatcatctccaccattcaggatcgtggttatgtgcgggtggaaaaccgccgtttctac
gccgagaagatgggggagatcgtgaccgatcggctggaagataacttccgcgagctgatg
aattacgattttaccgcccgtatggaaaatagcctcgacctggtggcgaacagccaggcc
gagtggaaagcggtgctggatgaattcttcgccgaattcagcaaacagctggaaaccgcc
gagctggagccggacgaaggcggcatgaagccgaaccagatggtgctgaccagcattgat
tgcccgacctgcggccgcaaaatggggatccgtaccgccagcaccggggtgttcctcggc
tgttccggttacgcgttgccgcccaaagaacgctgcaaaaccaccatcaacctgattccg
gaagcggaagtgttgaatgtgctggaaggcgacgaggcggaaaccaatgcgctgcgcgcc
cgtcgccgctgcccgaaatgcggcacggcgatggacagctacctgatcgacaatcagcgc
aaactgcatgtgtgcggcaacaacccgtcctgcgatggctatgagatcgaacaaggcgag
ttccgcctcaaaggctatgacggcccggtagtggaatgcgagaagtgcggttcggaaatg
cacctgaaaatggggcgtttcggcaaatatatggcctgtaccaacgaaagctgcggcaat
acccgcaaaattctgcgtaacggggaagtggcgccgccgaaagaagatccggtgccgttg
ccggagctgccgtgcgagaaatccgacgcctattttgtgctgcgcgatggcgcagcgggc
gtgttcctggcggccaataccttcccgaaatcgcgggaaacccgcgcgccgctggtggaa
gaactggtgcgtttccgcgatcgcctgccagagaaattacgctatctggccgaggcgccg
gtggtcgatccggaaggcaacaaaacgctggtgcggttcagccgcaaaaccaaacagcag
tatgtttcctctgaaaaagagggcaaagctaccggatggtcggcattttatgtggacggc
aaatgggtggaaagcagccgctaa
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