Dickeya fangzhongdai DSM 101947: CVE23_11800
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Entry
CVE23_11800 CDS
T05277
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfn03016
]
CVE23_11800
Enzymes [BR:
dfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CVE23_11800
Transfer RNA biogenesis [BR:
dfn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CVE23_11800
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
RGS_DHEX
Motif
Other DBs
NCBI-ProteinID:
ATZ96659
UniProt:
A0A2K8QT51
LinkDB
All DBs
Position
complement(2640650..2641771)
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AA seq
373 aa
AA seq
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MNYQLITTDEGLSAVCAQACAVPEVALDTEFVRTRTYYPQLGLIQLYDGDNLSLIDPLAI
GDWAPFRALLQNPQVTKFLHAGSEDLEVFLNAFGCLPSPFIDTQILAAFLGKPLSYGFAA
LVADYRQVTLDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARTLVEETRTAGRLEAAL
DECLLLCQRRQEVLAPELAYREIGNAWQLRGRHLACLQKLAAWRLSKARERDSAVNFIVR
EENLWQVARCLPGSLGELDSLGLSGPEIRYHGKTLLALVAETAALSEADYPPPVVNLIDY
PGYKKAFRDIKALVQQCAEQSGLSAELLASRRQINRLLNWHWKLTLPENEPEMVTGWRGR
LFGPGLKDILAHY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgattactaccgatgaaggattatcagcggtgtgcgcgcaggcgtgc
gcagtgcctgaggtggcgttggacaccgagtttgtccgtacccgcacctattatccgcaa
ctggggctgattcagttgtatgacggtgacaatctgtcgctgatcgacccgttggcgatc
ggtgactgggcgccgtttcgcgcgctgttgcagaacccgcaggtgaccaagtttctgcat
gccggcagcgaagatctggaggtgtttctgaatgcgttcggctgcctgccgtcgccgttc
atcgatacccagattctggcggcgtttctgggtaagccgttgtcctatggttttgccgcg
ctggtggcggattaccgtcaggtcacgctggataaaagcgaatcccgcaccgactggctg
gcgcgtccgctcagcgaaaaacagtgccagtacgccgcggcggacgtgttctatctgctg
ccggtagccagaacgctggtggaggaaacccgtaccgcgggccggttggaagcggcgctg
gacgagtgcctgttactgtgccagcgccgtcaggaggtgctggcgccggaattggcgtat
cgggagattggcaatgcctggcaactgcgcggccgtcatctggcctgtttgcagaaactg
gcggcgtggcgtcttagtaaggcgcgggagcgcgacagtgcggtcaatttcattgttcgg
gaagagaacctgtggcaagtggcccgttgtctgcccggttcgcttggcgagctggattcg
ctggggttgagcgggccggaaattcgttatcacggcaagacgctactggcgctggtggcg
gaaaccgcagcgctgagcgaggcggattatccgccgccggtggtcaatctgatcgactat
cccggttataagaaagcgtttcgcgacatcaaggcgctggtgcagcagtgtgcggagcaa
agcggattgtcggccgaattgctggcatcccggcggcagattaaccgattgctgaactgg
cactggaaactgacattgccggagaatgaacctgaaatggtaaccggctggcgtggccgc
ctgtttggaccaggtctgaaagatattctggcgcattactga
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