Dickeya fangzhongdai DSM 101947: CVE23_12415
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Entry
CVE23_12415 CDS
T05277
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase (NADP(+))
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Pathway
dfn00250
Alanine, aspartate and glutamate metabolism
dfn00310
Lysine degradation
dfn00350
Tyrosine metabolism
dfn00650
Butanoate metabolism
dfn00760
Nicotinate and nicotinamide metabolism
dfn01100
Metabolic pathways
dfn01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
CVE23_12415 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
CVE23_12415 (gabD)
00310 Lysine degradation
CVE23_12415 (gabD)
00350 Tyrosine metabolism
CVE23_12415 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
CVE23_12415 (gabD)
Enzymes [BR:
dfn01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
CVE23_12415 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
CVE23_12415 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
CVE23_12415 (gabD)
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GFIT
Motif
Pfam:
Aldedh
DUF3813
Motif
Other DBs
NCBI-ProteinID:
ATZ94710
UniProt:
A0A2K8QPQ4
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Position
complement(2783676..2785136)
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AA seq
486 aa
AA seq
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MQLKNKTLFRQQCLIGGEWQDSSNGARLSVTNPATGAELGSIPLVTAEQTQQAISAAEQA
LSAWRQRTGKERAALMQAWAQLIRANQDDLAAILTAEQGKSLAEASGEIAYATSFIDWFA
EEAKRVEGSVLQSPQASQRLLVIKQGIGVCAAITPWNFPAAMITRKAAPALAAGCAMIVK
PAEQTPFTALALAELAQQAGIPAGVLQVVTGEAPSVGKILCDSPVVRKLSFTGSTEVGRI
LMAQCAPTVKKLSLELGGNAPFIVFDDADLEQAIKGILASKFRNSGQTCVCANRIYVQRG
IYPALAARLVAEVEKLKVGDGTQPGVMQGPLIDQDAVDKVEQHIDDALSKGAELLTGGSR
HALGGTFFTPTVIGGVTREMRFAREETFGPVAPLFPFDDEAQAVAMANDTEFGLAAYVYT
RDAVRQWRVPEALEYGMVGINTGLISNEVAPFGGVKQSGLGREGSRFGIEEYLEMKYLCV
DLTPSA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgaaaaataaaacgttattccgtcaacaatgtctgatcggcggcgaatggcag
gatagcagcaacggggcgcgtctgagcgtgaccaatcctgcgaccggcgccgagctgggc
agcattccgctggtgacggcggaacagacccagcaggcgattagcgccgccgaacaggcg
ctgagcgcgtggcgccagcgcaccggcaaagagcgtgctgcgctgatgcaggcatgggcg
cagttgattcgcgcgaatcaggacgatctggcggccattctgaccgccgagcagggcaaa
tcgctggcggaagccagcggtgaaatcgcttacgccacctcgtttatcgactggtttgcc
gaagaagccaagcgggtggaaggcagcgtgctgcagtcgccgcaggccagccagcgcttg
ctggtgatcaaacagggtatcggcgtgtgcgccgcgatcacgccgtggaacttcccggcg
gcgatgatcacccgcaaagccgcaccggcgctggcggccggctgcgccatgatcgtcaaa
ccggcggagcagacgccgtttaccgcattggcgctggcggaactggcgcaacaggccggt
attcccgccggcgtgttgcaggtggtgaccggcgaagcgccgtcggtgggtaaaatcctg
tgcgacagcccggtggtacgcaagttgagttttaccggctctaccgaagttggccgtatt
ttgatggcgcaatgtgcgccgacggtgaaaaagctgtcgctggaactgggcggcaatgcg
ccgtttatcgtgtttgacgatgctgatctggagcaggcgataaaaggcattctggcatcc
aaattccgcaacagcggccagacctgcgtctgcgccaaccgcatttatgtccagcgcggc
atctatccggcgctggcggcccggctggtggcagaggtggaaaagctgaaagtgggcgac
ggcacccaacccggcgtgatgcaaggcccgctgatcgaccaggatgcggtcgacaaagtc
gagcaacatattgacgatgcgctgtcaaaaggggcggaactgctgaccggcggctcacgc
cacgcgctcggcggcaccttcttcaccccgacggtgattggcggcgtgacgcgcgagatg
cgttttgcccgcgaagaaacgttcggcccggtggcgccgctgtttccgtttgacgatgaa
gcgcaggcggtggcgatggccaacgataccgaattcggcctggccgcctacgtctacacc
cgcgacgccgtccgtcagtggcgggtgccggaagcgctcgaatacggcatggtggggatc
aacaccggcctcatttccaacgaagtggccccctttggcggggtgaaacaatccggattg
ggacgcgaaggctcacgctttggcatcgaggaatacctggagatgaaatatctctgcgtt
gacctcaccccctcagcctga
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