Dickeya fangzhongdai DSM 101947: CVE23_12905
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Entry
CVE23_12905 CDS
T05277
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfn03019
]
CVE23_12905
Enzymes [BR:
dfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CVE23_12905
Messenger RNA biogenesis [BR:
dfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CVE23_12905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
T2SSE
nSTAND3
NACHT
nSTAND_NTPase5
PhoH
DUF6145
AAA_25
FtsK_SpoIIIE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ATZ94799
UniProt:
A0A2K8QMP5
LinkDB
All DBs
Position
complement(2890486..2894373)
Genome browser
AA seq
1295 aa
AA seq
DB search
MTSPLHALEPQLNALMLRDRQRLRRRLQGAMKVGNPQAQVSIAQDISQEIDAARLRVEQR
RASLPAIRYPEALPVSQKREAILSAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVTGL
IGHTQPRRLAARSVADRIAAELETPLGSTVGYKVRFNDQVGDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPQRFSRHFGNA
PIIEVSGRTYPVDVRYRPVVEEAQDSDRDQLQAILDAVDELCREGPGDILVFMSGEREIR
DTADALSKQDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVAAGICIRLYSEQDFLSRPAFT
DPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELSALQSSDDGHYR
LTPQGRQLAQLPIDPRLARMVLEARQTSCVREVMIITAALSIQDPRERPIEKKQAAEEKH
RRFADKESDFLAFVKLWDYLQEQQKALSSSQFRKLCRSDYLNYLRVREWQDIYTQLRQVV
KELGFPVNSEPADYRSLHGALLTGLLSHIGQKDVEKQEFSGARNTRFAIFPGSGLFKKPP
KWTIVAELVETSRLWGRIAARIEPEWVEPLAQHLIKRSYSEPHWEKAQGAVMAQEKVTLY
GLPLVAARKVNYGAIDPVVSRELFIRHALVEGDWQTQHAFFRANQKLRLEVEELENKSRR
RDILVDDETLFAFYDQRLPHDVVSSRHFDNWWKQASKTDPDQLNFEKAMLIKDGAERVSA
LDYPNHWQQGELRLRLTYQFEPGADADGVTVHIPLPVLNQVKEDGFEWQIPGLRRDVVVA
LIKSLPKPIRRNFVPAPNYAEAFLARVTPLEKGLLEALERELRLMTGVTVDREAWQWDQV
DEHLKMTFRVIDEKSRTLREGKNLRALKDQLQEKVQQTLSAVADDGIEQRDLHIWSFGDL
PERYEQKRGGYAVKAYPALVDEKDSVAIRLFDSPHQQQQMMWRGQRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDKLMAVAGGPVWQEDAFHQLHERVRAEL
NDTVVDIAQQVEQILTTVFSINKRLKGRVDMALALALSDIKTQMSGLVFRGFVTDNGWKR
LPDVLRYLQAIERRLDKLAQDVHRDRAQMLKVEQVQQAWQQWLNKLPPERREDDDVKAIR
WMIEELRVSYFAQQLGTPYPVSDKRILQAMGQIEG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgacatcacctctccatgcgttagaacctcagcttaatgcgctaatgctgcgcgaccgg
caacgcctgcgccgccgtttgcaaggcgcgatgaaagtgggaaatccgcaggcacaggtt
tcgattgcgcaggacatcagccaggaaatcgatgccgcgcggctgcgggtggagcagcgc
agggcgtcgttgccggcgatacgttacccggaagccttgccggttagccagaagcgcgag
gcgatcctcagcgctatccgcgaccatcaggtggtgatcgtcgccggggaaaccggttcc
ggcaaaaccacccagttgccgaagatgtgtctggagttgggacgcggcgtcaccgggctg
atcggtcatactcagccgcgccggctggcggcccgcagcgtggcggaccgcatcgcggcg
gagctggagacgccgcttggcagcacggtgggctacaaggtgcgattcaacgatcaggtc
ggcgacaacacgctggtcaaactgatgacggacggtatcctgctggcggagattcagcag
gatcggctgctgatgcagtacgacacgctgatcatcgatgaagcgcacgaacgcagcctc
aacattgactttattctcggttacctcaagcaactgctgcccagacggccggacctcaag
gtgatcatcacctccgccaccatcgatccgcagcgtttttcacgtcacttcggcaatgcg
ccgattattgaggtgtccggaaggacgtatccggtggatgtccgctatcggccggtggtg
gaagaggcgcaggacagcgatcgcgaccagttgcaggcgattctggatgcagtggatgaa
ctgtgtcgtgaagggccgggcgatattctggtgttcatgagcggcgagcgggaaatccgc
gataccgccgacgcgctgagcaagcaggacctgccgcataccgagattttgccgctgtac
gcgcggctttccaatcaggaacagaaccgggtgttccagtctcaccacggacggcgcatt
gtgctggcgaccaacgtggcggaaacctcgctgacggtgccgggcattcgttacgtgata
gaccccggcaccgcacgcatcagccgctacagctatcgcaccaaagtgcaacggctgccg
atcgagccggtgtcgcaggcttccgccaaccagcgtaaaggacgttgcggccgtgtggcg
gcgggcatctgtatccggctctattccgagcaggattttctctcccggccagcgtttacc
gacccggagattttgcgcaccaacctggcgtcggtcattttgcagatgacggcgttgggg
ctgggcgatatcgcggcgtttccatttgtcgaagcgccggataagcgcaacattcaggat
ggggtgcggctgctggaagaactgagcgcgcttcagagcagcgacgacggtcattaccgc
ttgacgccgcaggggcgccagctggcgcagttgcctatcgacccgcgactggcgcgcatg
gtgctggaagcgcgccagaccagctgcgtgcgcgaggtgatgatcatcaccgccgcgttg
tcgattcaggacccgcgcgagcgtccgatagagaaaaagcaggcggcggaggagaaacac
cgtcgtttcgccgacaaagagtccgattttctggccttcgtcaaactgtgggattacctg
caagagcagcagaaagcgctgtcgtccagccagtttcgcaaactgtgccgcagcgattac
ctcaactacctgcgggtgcgggaatggcaggatatctacacccaattgcgtcaggtggta
aaagaactgggcttcccggtcaacagcgaaccggcggattaccgtagcctgcacggcgcg
ttgctgaccgggctgctgtcccacatcggacaaaaagacgttgaaaagcaggagttcagc
ggcgcgcgcaacacccgtttcgccattttccccggttccggtctgttcaaaaagccgccg
aagtggaccatcgtggcggaactggtggaaaccagccgcctgtgggggcgcatcgccgcg
cggatcgaaccggaatgggttgaaccgctggcgcagcacctgatcaaacgcagctacagc
gagccgcactgggagaaagcgcagggcgcggtgatggcgcaggaaaaggtcacgctgtac
ggtctgccgctggtggcggcccgcaaggtcaattacggcgccatcgacccggtggtgtcg
cgcgagctgttcattcgccatgcgctggtggaaggcgactggcagacccagcatgcgttt
ttccgcgccaatcagaaactgcgtttggaagtggaagaactggagaacaagtcccgccgc
cgcgacattctggtggatgacgagacgctgtttgcgttctacgaccagcgccttcctcat
gacgtggtgtcgagccgtcatttcgacaactggtggaagcaggcgtcgaaaaccgacccg
gatcagctgaatttcgagaaggctatgctgatcaaagacggggcggagcgcgtcagcgcg
ctggactaccctaaccactggcagcagggcgagctgcgtttgcggctcacctatcagttc
gagccgggagcggacgccgacggcgtcaccgtgcatatcccgctgccggtactgaatcag
gtcaaagaggacggattcgaatggcagatcccggggctgcgccgtgacgtggtggtggcg
ctgatcaaatcgctgccaaaaccgatacggcgtaacttcgtgccggcgcccaactatgcc
gaagcatttctggcgcgggtgacgccgctggagaaagggctgctggaggcgctggagcgc
gagctgcggctgatgaccggcgtgacggtcgatcgtgaggcctggcagtgggatcaggtg
gacgaacacctgaaaatgaccttccgggtgatagacgagaaaagccgaacgctgcgggaa
ggcaagaatctgcgtgcgctgaaagatcagttgcaggagaaggtgcagcaaacgctgtcg
gcggtggcggatgacggcatcgaacagcgcgatctgcatatctggagttttggcgatttg
ccggagcgttacgagcagaaacgcggcggctacgcggtaaaagcctatccggcgctggtg
gacgagaaagacagcgtggcgattcgtctgtttgattcgccgcaccagcagcaacagatg
atgtggcgcggtcagcgccgcctgctgttgctcaacattccttctcccatcaagtatctg
catgaaaagctgcctaacaaggccaagctggggctgtatttcaacccgtacggcaaggta
ctggagctgatcgacgactgcatcgcctgcggcgtggacaagttgatggcggtagcgggc
ggcccggtgtggcaggaagacgcgttccaccagttgcatgagcgggtacgtgcggaactg
aatgacacggtggtggatatcgcccaacaggtggagcagattctgaccacggtcttctcg
atcaacaaacggctcaaaggccgggtggatatggcgctggcgctggccttgagcgacatc
aagacgcagatgagcgggctggtgttccgcggcttcgtcactgacaacggctggaagcgg
ctgccggatgtgctgcggtatctgcaggccatcgagcgtcggttggataaactggcgcag
gacgtacaccgcgaccgcgcgcaaatgctaaaagtggagcaggtgcagcaggcctggcag
cagtggctgaacaagctgccgccggaacggcgtgaagatgacgacgtgaaagccattcgc
tggatgatcgaagaactgcgcgtcagctacttcgctcagcaactgggcacgccttatcct
gtttccgataaacgcattttgcaggcgatggggcagattgaggggtaa
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integrated database retrieval system
