Dickeya fangzhongdai DSM 101947: CVE23_13150
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Entry
CVE23_13150 CDS
T05277
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfn03016
]
CVE23_13150
Enzymes [BR:
dfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CVE23_13150
Transfer RNA biogenesis [BR:
dfn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CVE23_13150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF7716
Motif
Other DBs
NCBI-ProteinID:
ATZ94840
UniProt:
A0A2K8QQ35
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All DBs
Position
2945346..2947277
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGIVKATDKGFGFLEADAQKSYFIPPPHMKKVMHGDRI
IATLHTEKEREIAEPETLVEPFLTRFVGRVQKKDDRLSIVPDHPLLKDAIPCRPARGVEQ
DFKEGDWAVAEMRRHPLKGDRGFFADLTQYITTGDDPLAPWWVTLSRHNLERVAPDADAA
DLDDGQLEREDLTRLDFVTIDSASTEDMDDALYVQDNGDGTLDMTVAIADPTAYVRADSE
LDAIARQRAFTNYLPGFNIPMLPRHLSDDICSLRPNERRPVLACRMTIAADGALSQIRFF
AAWIESRAKLVYDEVSDWLEQQGDWQPESDNIAGQIRLLHRVCQARSAWRTTHALVFRDR
PDYRFLLGENGEVLDIVTEPRRIANRIVEEAMIAANVCAAQVLRDELGFGIYNVHNGFDP
VSIDQAVAVLESNGIQADAQQLLTLDGFCILRRELDAQPTQFLDSRIRRFQTFAEISTAP
GPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIITHTPAEKPQDEVTLQLAERRRLNRMA
ERDVSDWLYARFLKGKAGTDARFSAEIIDVNRGGLRVRLLDNGATAFIPASFIHAVRDEL
VCSQDTGIVTVKGEPVYRQSDTLTVMLTEVRLETRSIIAKPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaatccgctgcttgcgcagcttaaacagcaactccactctcagacgcca
cgagcggaaggcatcgtcaaagccaccgacaaaggattcggttttcttgaagccgacgcg
cagaagagctatttcatcccgccgccgcacatgaagaaagtgatgcacggcgaccgtatc
atcgccacgctgcataccgagaaagaacgtgaaatcgccgagccggaaacgctggtggaa
ccgttcctgacccgttttgtcggtcgggtgcagaaaaaagacgaccgtctgtccatcgtg
ccggaccatccgctgctgaaagacgccattccctgccgccctgcgcgcggggttgagcag
gactttaaagaaggcgactgggcggtagcggaaatgcgccgccatccgctgaaaggcgac
cgtggattttttgccgatctgacgcagtacattaccaccggcgacgacccgctggcgccc
tggtgggtgacgctgtcgcgccataatctggaacgcgttgcgccggacgcagacgcggcc
gatctcgacgacggccagcttgaacgtgaagacctgaccaggctggacttcgtcaccatc
gacagcgccagtaccgaagatatggatgacgcgctgtatgtgcaggacaacggcgacggc
acgctggacatgaccgtggcaatcgccgatccgaccgcctacgtgcgcgccgacagcgag
ctggacgccatcgcccgtcagcgcgcgttcaccaactacctgcccggcttcaatattccg
atgctgccgcgtcacctgtcggacgacatctgctcgctgcgcccgaacgaacgtcgtccg
gtgctggcctgccgtatgacgatcgccgccgacggcgcgctgagccagattcgcttcttt
gccgcctggatcgagtcgcgcgccaaactggtgtacgacgaggtgtccgactggctggag
caacagggcgactggcagccggaaagcgataatattgccggccagatccgcctgctgcat
cgcgtgtgtcaggcccggagcgcctggcgcaccacccacgcgctggttttccgcgaccgt
ccggactaccgtttcctgctgggtgaaaacggcgaggtgctggatatcgtcaccgaaccg
cgtcgtatcgccaaccgcatcgtggaagaagcgatgatcgccgccaacgtctgcgcggca
caggtattgcgcgacgaactgggctttggcatctacaacgtccacaacggtttcgacccg
gtcagcatcgatcaggcggtagcggtactggaaagcaacggtattcaggccgatgctcag
caactgctgacgctggacggcttctgcattttacgccgcgaactggacgcccagccgacc
cagttcctcgacagccgtattcgccgcttccagacatttgcggaaatcagcaccgcgccc
ggcccgcacttcggtctggggctggaggcttacgccacctggacctcgccgatccgtaaa
tacggcgatatggtcaaccaccggttgctgaaagcgatcatcacgcatactccggcggaa
aaaccgcaggatgaagtgacgctgcaactggccgagcgccgccgtctcaaccggatggcg
gaacgcgacgtcagcgactggctgtacgcccgtttcctgaaaggcaaagccggcaccgac
gctcgttttagcgccgagattatcgacgtgaatcgcggcggtctgcgcgtgcggttgctg
gacaatggcgccaccgcctttattccggcctcgttcattcacgcggtgcgcgacgaactg
gtgtgcagtcaggacaccggcatcgtcacggtgaaaggcgaaccggtctaccgtcagagc
gacaccctgacggtgatgctgaccgaggtgcggctcgaaacccgcagcatcatcgccaaa
ccggcggcctga
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