Dickeya fangzhongdai DSM 101947: CVE23_16565
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Entry
CVE23_16565 CDS
T05277
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Pathway
dfn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CVE23_16565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfn03019
]
CVE23_16565
03009 Ribosome biogenesis [BR:
dfn03009
]
CVE23_16565
03036 Chromosome and associated proteins [BR:
dfn03036
]
CVE23_16565
Enzymes [BR:
dfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
CVE23_16565
Messenger RNA biogenesis [BR:
dfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CVE23_16565
Ribosome biogenesis [BR:
dfn03009
]
Eukaryotic type
90S particles
RNase
CVE23_16565
Prokaryotic type
rRNA processing factors
CVE23_16565
Chromosome and associated proteins [BR:
dfn03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
CVE23_16565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DSRM_2
RM44_endonuclase
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
ATZ95454
UniProt:
A0A2K8QPM1
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All DBs
Position
complement(3711624..3712304)
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AA seq
226 aa
AA seq
DB search
MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKHNERLEFLGDSILSFVIANALYHRF
PRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVEALI
GGVFLDSNIQTVERLILQWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVVQVR
GEAHDQEFTIHCQVSGFSEPVVGTGSSRRKAEQAAAEQALKKLELE
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccatcctgataaatcgtttacaaaaaaagctgggctatactttccaacaatat
gaccttttattgcaggcgctgactcaccgtagcgccagcagtaaacataacgaacggctg
gagttcctgggggattctatcctgagtttcgttatcgccaatgcgctgtaccaccggttt
ccgcgtgttgacgaaggcgatatgagccgaatgcgcgctacgctggtgcgcggcaatacg
ctggcggagattgcccgagagtttgaactgggcgaatgcctgcgtcttggtcccggcgaa
ttgaaaagcggcggtttccgccgtgagtcgattctggcggataccgtggaagcgttgatt
ggcggggtgtttctggacagcaatatccagaccgtcgagcggctgattctgcagtggtac
cagactcgtctggatgagattagcccaggcgacaagcaaaaagatccgaaaacccgcctg
caggaattcctgcagggacgccacctgccgttgcctacctatctggtcgtgcaggtgcgt
ggcgaggcgcacgatcaggaatttaccattcattgccaggtcagcgggtttagcgagccg
gtagtgggtaccgggtcaagtcgtcgtaaagctgaacaggctgcggcggaacaggccctg
aaaaagctggagcttgaatga
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