Dickeya fangzhongdai DSM 101947: CVE23_17760
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Entry
CVE23_17760 CDS
T05277
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dfn03009
]
CVE23_17760
Enzymes [BR:
dfn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CVE23_17760
Ribosome biogenesis [BR:
dfn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CVE23_17760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
RrnaAD
MTS
Methyltr_RsmB-F
PCMT
Cons_hypoth95
Methyltransf_11
TRM5-TYW2_MTfase
Methyltrans_SAM
Methyltransf_23
Methyltransf_15
Methyltransf_32
Ubie_methyltran
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
ATZ95649
UniProt:
A0A2K8QQ57
LinkDB
All DBs
Position
complement(3956557..3957891)
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AA seq
444 aa
AA seq
DB search
MAQFYSPNRRVTTRQTLTVTANDLDPFGQGVARHQGKTLFIPGVLPGEQAEVQLTEEKRQ
FAHARLRRLLTTSEERVTPRCPHFSVCGGCQQQHASQPLQHRSKAAALTHLMTRETGAVP
PEPEVIAGSAYAYRRRARLALYYQAKTRRLQMGYRQAGSHDLVDIGACPILRPELEALLA
PLRDCLGQLQAVRRLGHVELVLAEQGPLVILRHLDPLRDADRQAMTAFAAQHGAALFAAP
EAGALECLHGDMPSYRIAGLSLAFSPRDFIQVNDDINQRMVERALAWLDPQPQDRVLDLF
CGMGNFTLPLAARAASVVGVEGVAALVDKGRENAQRNGLTQVTFYHHDLEEDVTRQPWAS
MGFDKILLDPARAGAPGVMPQIVKLAPRRVVYISCNPTTLARDSKVLMAAGYRLARLAML
DMFPHTGHLESMALFLLGSDGSVK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctccaaaccggcgcgtgacgacccggcaaacccttaccgtgacg
gcgaatgatctggatccattcggacagggagtagcccgccatcagggaaaaacgctgttc
atccccggcgtgctgccgggtgagcaggccgaggtgcagttgacggaagagaaacgccag
tttgcccatgcccggctgcggcggttgttgaccaccagcgaagagcgcgtgacgccgcgc
tgcccgcacttttccgtttgcggcggttgccagcagcagcatgccagccagccgttgcag
caccgcagcaaggcggccgcgctgacacacctgatgacgcgggaaaccggcgccgtcccg
ccggagccggaggtaatcgccggatcggcctatgcctaccgccgccgcgcgcgccttgca
ttatactatcaggcgaaaacgcgccggttacagatgggctaccggcaggcgggatcgcac
gatttggtggatatcggcgcctgcccgattttgcggccggaactggaagcgctgctggcg
ccgttgcgcgattgtctcgggcagttgcaggccgtccggcggcttgggcacgtggagctg
gtgctggccgagcaggggccgttggtgatcttgcgccatctggatccgttgcgcgacgct
gaccgtcaggcgatgacggcgttcgccgctcagcatggcgcggcgctgtttgcggcgccg
gaagccggcgcgctggaatgcctgcacggcgacatgccgtcttatcgcatcgccggatta
tcgctggcgttcagcccgcgggatttcattcaggtcaatgacgacatcaaccaacgtatg
gtggaacgggcgttggcgtggctggatccgcagccgcaggaccgggtgctcgacctgttt
tgcggcatgggcaattttaccctgccgctggcggcgcgcgccgccagcgtggtcggggtc
gaaggcgtggcggcgctggtggacaaagggcgggaaaacgcccagcgcaacgggctgacg
caggtcacattttatcatcatgacctggaagaggacgtcacccggcaaccgtgggcgtcg
atgggatttgataagatactgctcgatccggcccgcgccggcgcgccgggcgtgatgccg
cagattgtgaaactggctccccggcgggtggtgtatatatcctgtaatcccaccacgctg
gcgcgggacagcaaggtgctgatggccgccggttatcgtctggcccggctggccatgctg
gatatgtttccacataccggacatcttgagtcgatggcactgtttttgcttggttccgat
ggctcggtaaagtag
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