Dickeya fangzhongdai DSM 101947: CVE23_20825
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Entry
CVE23_20825 CDS
T05277
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Pathway
dfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVE23_20825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfn03019
]
CVE23_20825
03400 DNA repair and recombination proteins [BR:
dfn03400
]
CVE23_20825
Enzymes [BR:
dfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVE23_20825
Messenger RNA biogenesis [BR:
dfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CVE23_20825
DNA repair and recombination proteins [BR:
dfn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CVE23_20825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ATZ96203
UniProt:
A0A2K8QRT4
LinkDB
All DBs
Position
complement(4641808..4643637)
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AA seq
609 aa
AA seq
DB search
MSTAEVLNKETLAMQVLRETFGYQQFRPGQQAIINAVISGRDCLVIMPTGGGKSLCYQIP
ALVLEGLTLVVSPLISLMKDQVDQLQAYGVAAACLNSTQTREQQQEVFSACRRGELKLLY
IAPERLTTDGFLEQLTHWNTTLIAIDEAHCISQWGHDFRPEYRALGQIKQQFPALPIVAL
TATADETTRQDIARLLDLRDPLINISSFDRPNIRYTLVEKFKPLDQLWLFVQGQRGKSGI
VYCNSRAKVEDLCARLQNRGLSVGAYHAGLENDRRAQVQEAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFYDPADMAWLRRCLEEKPAGMQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGENRQQACGNCDVCLDPPRRYDGLVDAQKAL
SCVYRVGQRFGIGYIAEVLRGANNQRIREFGHDKLPVYGLGKDKTQEQWVSILRQLIHLG
LLAQNIAHHSALQLTESARPVLRGEVPLQLAVPRVISLSKPRASQKTYGGNYDRKLFAKL
RKLRKSIADEDNIPPYVVFSDATLLEMAELLPVTASELLAVNGVGQRKLERFGAPFMTLI
RDHLDNGDD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcagaagtattgaataaagaaacgctggcgatgcaggtgctgcgagaaacc
ttcggttaccagcaattccggccgggtcagcaggcaattatcaatgccgtcatcagcggg
cgtgactgcctggtgatcatgccgaccggcgggggcaaatccctgtgttatcagattccg
gcgctggtgctggaagggctgacgctggtggtgtcgccgcttatttccctgatgaaggat
caggtcgatcagttgcaggcttatggcgtggcggcggcttgcctcaattccacccagacc
cgtgagcagcagcaggaggtgttcagcgcctgtcgccgcggcgaactgaagctgctatac
atcgcgccggaacgtctcaccaccgacgggtttctggagcaactgacgcactggaacacg
acgctcatcgccatcgacgaagcgcactgcatttcccagtgggggcacgattttcgcccg
gaataccgcgcgctggggcagatcaaacaacagtttcccgctctgccgattgtggcgctg
accgccaccgccgatgaaaccacccgtcaggatatcgctcgtctgctggatttgcgcgac
ccgctgatcaatatcagcagctttgaccgccccaacatccgctacacgctggtggaaaaa
tttaaaccgctcgatcaactgtggctgtttgtgcaagggcagcgcggcaagagcggcatc
gtgtattgcaacagccgggccaaggtggaagacctgtgtgcccggttgcagaaccgcggg
ctgagcgtcggcgcttatcacgccgggctggaaaacgaccgtcgcgctcaggtgcaggag
gcgtttctgcgcgatgacctgcaggtggtggtcgccacggtggcgttcggcatgggtatc
aacaaaccgaacgtacgcttcgtggtgcacttcgacatcccgcgtaatatcgaatcctac
tatcaggaaaccggtcgcgccgggcgcgacggcctgcccgccgaagcggcgctgttctac
gacccggcggacatggcctggctgcgccgctgtctggaagaaaaaccggccggcatgcag
ctggatatcgagcggcacaaactgaatgcgatgggggcgtttgccgaagcgcagacctgc
cgccgtctggtgctgctcaactactttggcgaaaaccgtcagcaagcgtgcggcaactgc
gatgtttgtctcgatccgccccgacgctacgacgggctggtggacgcgcagaaagcgctg
tcctgcgtctaccgcgtcgggcagcggttcggcatcggttacatcgccgaagtgctgcgc
ggcgccaataaccagcgcattcgcgaattcggtcacgacaaactgccggtgtacggcctg
ggtaaggataaaacgcaggagcagtgggtcagcatcctgcgtcagttgatccacctgggg
ttgctggcgcagaacatcgcccaccattccgcgttgcaactgaccgagtcggcacggccg
gtgctgcgcggcgaagtgccgctgcaactggcggtgccgcgcgtcatcagcctgagcaag
ccgcgcgccagccagaaaacctacggcggcaattacgaccgcaaactgttcgccaaactg
cgcaaactgcgtaaatccatcgctgacgaagacaatattccgccgtacgtggtgttcagc
gacgccacgctgctggaaatggccgaactgttgccggtcaccgccagcgagctgctggcg
gtcaatggcgtcggccagcggaaactggagcgatttggcgccccctttatgacgttgatc
cgcgatcatttggataacggcgacgattga
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