Dehalogenimonas formicexedens: Dform_00220
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Entry
Dform_00220 CDS
T04654
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
dfo
Dehalogenimonas formicexedens
Pathway
dfo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dfo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dform_00220 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfo03021
]
Dform_00220 (rpoA)
03400 DNA repair and recombination proteins [BR:
dfo03400
]
Dform_00220 (rpoA)
Enzymes [BR:
dfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dform_00220 (rpoA)
Transcription machinery [BR:
dfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dform_00220 (rpoA)
DNA repair and recombination proteins [BR:
dfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dform_00220 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
APV43583
UniProt:
A0A1P8F542
LinkDB
All DBs
Position
193885..194910
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AA seq
341 aa
AA seq
DB search
MSDIAQPVIETKEARSDYAHFVAEPLDKGFGTTLGNALRRILLSSLPGAAVTQVRIEGVQ
HEFSPLPKAKEDTMDFLLNLKGLRLKSLANRPGRLILDVKGKKRVTAADIEPSSDFEVAN
PDLYLLTLDDKDAHLYMEMDVELGRGYILADSKENPTIGTIPQDAIFSPVEKVNYTTEPV
HMGQETGYERLHLHVWTDGTISPSQALSESAAILLKQFQPFTSVGGAPVIVHEKRIEKLA
IPEEKFNMPIEQLDLSVRSLNCLRHAGITTVGEVMTRGIDELMGLRNFGLKSLNELEERL
QVFGLSLNQPGDACPPEEEPVAAEEEEEKKPKRKRSQAAAE
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagatattgcccagcccgtaattgaaacaaaagaggcccgcagcgactacgcccac
tttgtcgccgagcccctggataaaggttttggcactaccctggggaatgccctgcggcgg
atattgctgtcatcactgccgggcgccgcggtgacccaggtgcgcatcgaaggcgtgcag
cacgaattttcgccgctgcccaaggccaaggaagacaccatggatttcctgctgaacctg
aaagggttgcggctgaaatccctggccaaccggccggggcggcttattctcgatgtcaaa
ggcaaaaagcgggtgaccgccgctgatatcgagccgtccagcgatttcgaggtggccaat
cctgacctgtacctgttgaccctggatgacaaggacgcccacctgtacatggagatggac
gtcgaactgggccggggctatatcctggctgattccaaggaaaacccgaccatcggcacc
attccccaggacgccattttcagcccggtggagaaggtcaactataccaccgagccggtc
cacatggggcaggaaacaggctacgagcggctgcatcttcatgtctggaccgacggcacc
atttcgccgtcccaggcgctgtccgagtccgcggctatcctgctcaagcagttccagccg
ttcacctcggtcggcggggcgccggtaatcgtccacgaaaaacggattgagaaactggcc
attcccgaagaaaagtttaacatgcccatcgagcagctggatctttccgtccgctccctc
aactgcctgcgccatgccggtatcaccaccgtcggcgaggtcatgaccaggggtatcgac
gaactgatgggcctccggaacttcggcctgaagagccttaacgaactggaagagcggctg
caggtcttcggcctgagcctgaaccagccgggcgacgcctgcccgccggaagaagagccg
gtcgcggctgaggaagaagaagaaaagaaacccaagcgcaagcgctctcaggcggctgcg
gagtaa
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