Dehalogenimonas formicexedens: Dform_00767
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Entry
Dform_00767 CDS
T04654
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dfo
Dehalogenimonas formicexedens
Pathway
dfo03410
Base excision repair
dfo03430
Mismatch repair
dfo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Dform_00767 (recJ)
03430 Mismatch repair
Dform_00767 (recJ)
03440 Homologous recombination
Dform_00767 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfo03400
]
Dform_00767 (recJ)
DNA repair and recombination proteins [BR:
dfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Dform_00767 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Dform_00767 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dform_00767 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
GLUCM-like_C
Motif
Other DBs
NCBI-ProteinID:
APV44121
UniProt:
A0A1P8F6L1
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All DBs
Position
719241..720920
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AA seq
559 aa
AA seq
DB search
MRGARWQVASTEVPPELAGRYPALMVRIMAGRGIRTLEAAELFLAGDARLSHDPMLLPDI
HPAMARIYRAILTGERIAVYGDFDTDGITATALMVTGLRCLGAEVKPYIPHRLTEGYGLK
TEALKKLADEGVTLVVSVDCGITAVNEVKAARGLGLDIVVTDHHLPLEALPPAVAVIDPK
RADSSYPFQELAGVGVAFKVVEALFAGMGRPLPKEHFLELTAIGTIADIMPLTGENRYLV
KEGLKHLNDHPSPGLQQIINLSHLRAGQLNSESISWTVAPRLNAAGRLEHAMAGYELLMA
PSAAEAGDLAAMLEDRNAERQRLTAKFVTRAREKVLSGPLPLLLFVEDEECPPGILGLVA
GRLTDEFYRPSIVVRREDGAAIASCRSIPGFNITEAIDRCGHLLSHYGGHAQAAGFSLGS
EKLPELSRLISEIAAKQMASVDLQPILMIDAEARLHELGGNMYQVLNRLAPFGEGNRPPL
FVSKCVTVTDYRTMGANQEHIKMRLTQGGAVWEAVAFRQAEELKKVLPDPVDVVYNLELD
KFNGRETLRLNIVDFAPAS
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcggcgcccgctggcaggtagcttcaaccgaagtgcctcccgaacttgccgggcgc
tacccggcgctgatggtccggatcatggccggccgcggcatcaggacccttgaagctgct
gaattgttcctcgccggggatgcccggttgtcccatgacccgatgctcttgcctgatatt
catccggcgatggcccggatttaccgggctatcctgacgggagaacgcatcgccgtctat
ggagacttcgacaccgacggcatcacggcgacggcgctcatggtcaccgggctcaggtgt
ctcggcgctgaggtcaaaccgtacattccgcatcggcttactgagggctacggcttgaaa
accgaggctttaaagaagcttgccgacgaaggcgttaccctggtggtcagcgttgactgc
ggtatcaccgcggtaaacgaggtcaaggctgccaggggactgggattggacattgtcgtc
accgatcaccatttacctttggaagcgctgcctcccgcggtggcggttatcgaccccaaa
cgcgctgattcttcctacccttttcaggaactcgcgggtgtcggcgtcgctttcaaggtc
gtcgaagcccttttcgcggggatgggcagacccctgccgaaagagcatttcctcgagttg
accgcgataggcaccatcgccgatatcatgccgctgacaggcgagaaccgttatctggtc
aaagagggattgaaacacctcaacgatcatccgtcgcccgggctgcagcaaatcatcaac
ctctcccacctccgcgccgggcaactgaactcggagagcatttcctggacggtagctccc
aggctcaacgccgccggccggctggaacatgccatggccggatacgaactgttgatggcg
ccatccgccgccgaggcgggtgacctggctgcgatgctcgaagaccgcaacgctgaacgc
cagcggctgaccgcaaagtttgtcacccgggcacgggaaaaggtcctgtccggtccgctg
ccactgctgcttttcgttgaggacgaagagtgtccccccggcatcctgggcctggtcgcc
gggcggctgaccgatgaattctatcgccccagtatcgtcgtccgccgcgaagacggggcg
gctatcgccagctgccgctcaattcccggtttcaacatcaccgaagccatcgaccgctgc
ggtcaccttctaagccattacggcggtcacgcccaggccgcgggttttagcttgggctcc
gaaaaattgccggaactctcacggctcatctccgaaatcgcggccaagcagatggcgagc
gtcgatcttcagcccatactcatgatcgacgccgaagcccggctgcatgaactgggcggc
aacatgtaccaggtactgaaccggcttgcgccgttcggcgaaggcaaccgaccgccgctg
ttcgtgtcgaaatgcgtcactgtcaccgattacaggaccatgggtgccaaccaggaacat
atcaaaatgcgtctcacccagggtggcgcggtatgggaggcggtagccttccgccaagcc
gaggagttgaaaaaagttcttcccgatccggtggatgtggtatataatctggaacttgac
aagttcaacggccgggaaacacttcgactgaatatcgtggatttcgcgccggcgagctga
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