Dehalogenimonas formicexedens: Dform_00953
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Entry
Dform_00953 CDS
T04654
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dfo
Dehalogenimonas formicexedens
Pathway
dfo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dfo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dform_00953 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfo03021
]
Dform_00953 (rpoC)
03400 DNA repair and recombination proteins [BR:
dfo03400
]
Dform_00953 (rpoC)
Enzymes [BR:
dfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dform_00953 (rpoC)
Transcription machinery [BR:
dfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dform_00953 (rpoC)
DNA repair and recombination proteins [BR:
dfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dform_00953 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
APV44294
UniProt:
A0A1P8F743
LinkDB
All DBs
Position
complement(886521..890399)
Genome browser
AA seq
1292 aa
AA seq
DB search
MNEVIDFDAIRISLASPEQIRSWSYGEVTKPETINYRTLKPERDGLFCERIFGPTKDFEC
SCGKYKRIRYKGIICDKCGVEVARAKVRRERMGHIELACPVGHIWFTRGIPSRVGLLLDL
STRSLERIVYFSHYVITSVNEAARQAAIGDLEKGRRLEMDERQSEIDAKASAMESAGADI
QEINNLRRDFEAERDESEEETVSIVEQLAGLRTGNLLTESQYYDLKTRYPEIFEAKMGAE
AILDLLRAIDLGEMRNHLIQETRSSSGQRRKKASKQLQLVEAFRRSGNKPEWMVLTVLPV
LPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLLEIGAPEIIIRNEKRMLQEAVD
SLIDNGRRGRSVAVSGDHKAKSISDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLQLH
QCGLPRRMALELFKPFVMHRLVTDGLAPNIKSARRLVERARPEVYDILEDVVKDRPVMLN
RAPTLHRLSIQAFEPVLIDGSALQIHPLVCSAFNADFDGDQMAVHLPLSKAAVKEAREAM
LSIHNMLLPSSGDPVVTPSLDMVFGCYYLTTIRPGLKGEGKHFGSFEEVKRYFDLGIIEL
RAEIEVRTPDGEKLKTSAGRIIFNEALPPGLPFFNKPVDKSTIRRLIGEYKRVASDEVMA
KSLDHVKQLGFRFATRSGITIAMGDIAVPAAKSNIVATAESETGIIEQQYAQGLITDDER
YAGVIEIWMRATEQITDAISKGLDTYGNVYMMATSGAKGNISQIRQMAGMRGLMTNPSGR
IIDFPIKASLREGLSAIEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDLIIFEDD
CGTMDGLWIEEPKEKGILPPLAERISGRLAAQPVAHPQTGEILVDRNGEIDDKKAKEIAS
AGVTAVYVRSPLSCGSRRGVCTKCYWRDLGRGHTVEPYTAVGIVAAQSIGEPGTQLTLRT
FHTGGVVGTDITTGLPRVEELFEARPPKAQAIISEIDGTVQVMESDAGRSVQVISRETYQ
DEYELPEGWKLEVTEGQPVDMGAVLATAPEASKKSAHLTTGEFVLAARVGGRVSVEGSRL
VIKYEDIDQREYPVPAASHIAVKDGDIVKAGQRLTDGSVNPQDILAVLGREAVQRYLVEE
VQKVYFSQGVHINDKHIEVIVRQMMNRVRIDSSGDTDLVPGELVDKFRYEDINANILAEG
GEPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIHGKKDVLSGLKENVIIGKL
IPAQCQSCRDATADKNAELEAAKMVQLEQPAI
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagtcattgattttgacgccattcgaatctcgctggcctctccggagcagatc
cgcagttggtcgtatggtgaagtcaccaaacccgagaccatcaactaccggaccctgaaa
cctgaacgggacggccttttctgcgagcgcattttcggtccgaccaaggactttgaatgc
tcctgcggcaaatacaagcggatccgctacaagggcattatctgcgataagtgcggcgtt
gaggttgcccgggctaaggttcggcgcgagcgcatgggccatatcgagcttgcctgtccc
gttggccacatctggtttaccaggggtatcccaagccgcgtcggtctgcttctcgatctt
tcgacccgcagccttgaacgcatcgtctatttttcgcactatgtgatcacctcggtaaat
gaggcggccaggcaggccgccatcggtgaccttgaaaagggtcgccgccttgagatggac
gagcgccagagcgagatcgacgccaaggcttccgcgatggaatccgccggcgccgatatc
caggagatcaacaatctgcgccgcgacttcgaggcggaacgcgacgagagcgaagaagag
accgtcagcatcgtcgagcaactggccggcttacgcaccggtaatctgctgaccgaaagc
cagtattacgatctgaagacccggtatccggaaatctttgaagccaagatgggcgccgag
gcgattctcgacctgctgcgcgccattgaccttggcgagatgcgcaatcacctgatccag
gaaacgcgctcttcctcaggccagaggcgcaagaaagcgtctaagcaactccaactggtt
gaagcctttcgccggagcggcaacaagccggagtggatggtactgaccgtcctgccggtg
ctgcctccggatttgcgcccgatggtccaactcgatggcggccgcttcgcgacctccgac
ctgaacgacctttaccgccgcgtcatcaaccgtaacaaccgcctccagcacctgcttgag
atcggcgccccggagatcattatccgcaacgaaaagcgcatgctccaggaagctgtcgac
tctttgattgataacgggcgccgtggccgttctgtcgccgtgtccggcgatcacaaggct
aagtctatttccgatctgctgcgcggcaagcagggccgcttccgccagaacctgctgggt
aagcgcgtcgactactccggccgctcggtcatcgtggtcggccccagcctccagctgcat
cagtgcggtttgccccgccgcatggcccttgagcttttcaagccattcgtcatgcaccgc
ctggtcaccgacggattggctcccaacatcaagagcgcccgccggttggtggagcgggca
cgtcccgaggtatatgacattcttgaggatgtggtcaaagaccggccggtcatgctgaac
cgcgcgccgacgttgcaccggttgtcgatccaggcgttcgaacccgtgttgatcgacggc
tcggcgctgcagatccatcctttagtttgctccgctttcaacgccgacttcgacggcgac
cagatggccgtccacctgcctttatccaaggcggcggtcaaagaagcccgggaggctatg
ctgtccatccacaacatgctgctgccttcatcaggcgatccggtggtcacccccagcctt
gatatggtcttcggttgctactacctcaccaccatccgcccaggactcaagggcgagggt
aagcacttcggcagctttgaggaagtcaaaaggtatttcgacctcggcataatcgaactg
cgcgccgaaatcgaagtgcggactcccgatggcgaaaaactaaagaccagcgccgggcgc
attatctttaatgaagccttgccgccgggtttgcctttcttcaacaagccggttgacaag
tccaccatccgccgccttatcggcgagtataagagggttgccagtgacgaagtgatggcc
aagtcgctggatcatgttaaacaactgggcttccgtttcgcgacacgctcgggcatcacc
atcgccatgggtgacatcgctgtaccggcggctaaatccaatatcgtcgccaccgctgaa
tccgaaaccgggatcatcgaacagcaatacgcccagggtcttatcaccgacgacgagcgt
tatgctggcgttatcgagatctggatgcgggcaaccgaacagatcaccgatgccatctcc
aaaggcctggacacctacggtaatgtctacatgatggccacctcaggcgccaagggtaac
atttcccaaatccgccagatggccggcatgcgcggcctcatgaccaacccttccggccgc
atcattgacttcccgatcaaggcctccctgcgcgaaggcctgtcagccattgaatacttc
atctcgacgcacggcgcgcgcaagggtctggccgataccgctctgcgaacctccggctcc
ggctacctgacccgccgcctcatcgacgttacccaggacctgataattttcgaagacgat
tgcggcactatggacggactttggatcgaagaacccaaggagaagggcatccttccgccc
ctggccgagcgtatttcaggccggttggccgcccagccggtggcccatccccagactggc
gaaatcctggtcgaccgcaacggtgaaatcgacgataaaaaagctaaagagatcgcctcc
gccggcgtcaccgcggtctatgtccgctcgcctctgtcatgcggctcgcgccgcggcgtc
tgcaccaagtgctactggcgcgatctcggccgcggccataccgttgaaccgtataccgcc
gtcggtatcgttgccgcccagagtatcggcgaaccgggtacccagctgacgttgcggacc
ttccacaccggcggcgttgtcggtaccgacatcaccaccggtctgccccgcgtcgaagaa
cttttcgaggcccggccgcccaaggctcaggccattatttccgaaattgacggtacggtt
caggtcatggaatctgatgccggccgaagcgtgcaggttatctcccgtgaaacctaccag
gatgaatatgaactgccggaaggctggaaacttgaagtaaccgaaggccaacccgttgat
atgggtgccgttctcgccaccgcgccggaagcaagtaagaagtcggctcatctgactacc
ggtgaattcgttctggccgccagggtcggcgggcgggtaagtgtcgagggctcacgcctc
gttatcaaatacgaagatatcgaccagcgcgagtatcctgttccagcggcttcgcatatt
gctgttaaagacggcgacatcgtgaaagccggtcagcgcctgactgacggttccgtcaat
ccgcaggatattctggcggttctgggccgcgaagccgtccagcggtatctggttgaggaa
gttcagaaggtctacttctcacagggcgttcatatcaatgacaagcacatcgaggtcatc
gtccgccagatgatgaaccgtgttcggattgattcgtccggagataccgacctggttccc
ggtgaactggtggataaattccgctacgaagatatcaacgccaacattctcgccgagggc
ggtgaacctgccacggcgcacaccgtgctgatgggcatcaccagggcttcgctttcgacc
gaatcttggctggccgccgcctcgttccaggagacgacccgcgtcctgaccgacgccgcc
atccacggtaagaaagacgtcctgtcaggcctcaaggagaatgttatcatcggtaagcta
attccggcgcagtgccaatcctgccgtgatgccaccgccgacaagaacgcggaattggaa
gccgccaagatggttcaattggagcaaccagccatctag
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