Dehalogenimonas formicexedens: Dform_01084
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Entry
Dform_01084 CDS
T04654
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
dfo
Dehalogenimonas formicexedens
Brite
KEGG Orthology (KO) [BR:
dfo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Dform_01084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfo03021
]
Dform_01084
Transcription machinery [BR:
dfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Dform_01084
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CENP-B_N
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
APV44419
UniProt:
A0A1P8F7G5
LinkDB
All DBs
Position
1022361..1023875
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AA seq
504 aa
AA seq
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MEKERSENSINDEDLETPVAPADEEEEKEAEEETGPSGPGDLTAEDLSAEAEAESDTIPE
GAEALLPDLEMPLEQLEHGIVDDPVRMYLHEIGRVPLLNAETEKMLAKKMEEGKRIREIR
EQCRLKDGHPPTAVETMVCMLQELVKAAVTVSMLQKQLGLPVSTNFKEAVFSPKLRASID
QEIDQELTKSIAEEQGAPVSQIEQALIDLSLNSDLLPKKVLDGIPSDMELADIDKLVVDP
SFITRLEHYEHQLKNYLDTVEIEAKKAERHLIQANLRLVVSVAKKHIGRGMPLLDLIQEG
NIGLIRAVEKFDFHRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLLSVSR
SLSQKLGREPNPEEIAVEMELPADKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNA
LPPPDAASRQLLKEQIDNVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIR
QIEAKALRKLRHPSRSRKLKDYLE
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaacgatctgaaaattcgattaacgatgaggatctggaaaccccggttgcg
ccggcggatgaagaggaagaaaaggaagccgaagaggaaaccggtccctcaggtcccggc
gaccttaccgctgaagacctgtcagctgaggcggaggcggagtcagacaccatccctgaa
ggagcagaggcattgctgcccgatttggagatgcctctggagcaactcgagcacggcatt
gttgacgatccggtaagaatgtatctccacgagatcggacgagtaccgctgctgaacgcc
gaaacagaaaaaatgctcgccaagaaaatggaagagggaaaacgcatccgggagatacgg
gagcagtgccgcctgaaggatgggcacccccctaccgcggtggaaacaatggtttgcatg
cttcaagagctggtgaaggcggctgtaaccgtcagtatgttacaaaaacagctcggactc
cccgtttcaaccaatttcaaagaagcggtgttttcccccaagctacgcgccagtattgat
caggaaattgatcaggaactcaccaaaagcatcgctgaagaacagggcgccccggtttct
cagatcgagcaggcgctgatcgacctttctctgaatagtgacctcttacccaaaaaagtg
ctcgatggcattccctccgacatggaattggccgacatcgataaacttgtcgttgatccg
tcttttatcacccggctggagcactacgaacatcaactcaaaaattatcttgataccgtt
gaaatcgaagctaaaaaagctgaaaggcacctgatccaggctaacctcaggctggtggta
agcgtcgctaaaaaacatatcggccggggtatgccgctgctcgacctgatccaggaaggc
aacataggactaataagagcggtcgagaaatttgatttccatcgtgggttcaagttctca
acctacgccacctggtggatccgccaggccatcacccgcgctattgccgaccaggccagg
acgatccgtatcccggttcacatggtggaaacgatcaacaagcttttgtcggtctcaagg
tctctgtctcaaaaactggggagagaacccaacccggaagaaatcgccgtagaaatggaa
ctcccagccgacaaagtccgcgaaatcgcaaaagtctcccagttgccggtgtcgctggag
tctcccatcggggaagaagaagactcccaccttggggacttcatcgaagaccaaaatgcg
ctgcccccgcctgatgccgcttcgcgccaattactcaaggagcagatcgataacgtcctg
ggcagccttactccccgtgaacgcagagtgctgcaactccgattcggtttagaggacggc
cgaagccgaacacttgaggaggtggggaaagaattcaatgtaacgcgagagcggatccgt
cagattgaagccaaggcgcttcgtaagctgagacaccccagccgaagccggaagttgaag
gactaccttgaatag
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