Dehalogenimonas formicexedens: Dform_01091
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Entry
Dform_01091 CDS
T04654
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
dfo
Dehalogenimonas formicexedens
Brite
KEGG Orthology (KO) [BR:
dfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfo03400
]
Dform_01091
DNA repair and recombination proteins [BR:
dfo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Dform_01091
Archaeal homologous recombinant proteins
Dform_01091
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_29
SbcC_Walker_B
AAA_21
AAA_15
Rad50_zn_hook
VirB4_TrbE_N
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
APV44426
UniProt:
A0A1P8F7G2
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All DBs
Position
1029171..1031765
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AA seq
864 aa
AA seq
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MIPVRLKMRNFLPYRGDLASISFDGIHLACITGDNGSGKSSIIDAMTWALWGKSRLRSKT
TSDDDLITQGETETEITFDFRTGDGQIYRVARRRAKPKKPGTSGQSTLNLFLGPQEGFRN
ISGNTISETEEKINNILHLEYETFVSSAYLKQGEADHFTELRPNERKDILVGILGLDIYD
DLSQKARDKANEATAAKNMIGTGIELEQKQLERKPELESALSSTQKRLSETNRLLSEARL
TLDSLRSSWQLIQTREQMLRQADLAVRDIETDLKLRNNDLLEIEKRIKIHQAIADGKPEV
IEGYSRLQSARQANEDNHRKLTELRALEQQLRKLEQQISESRHLLVNKQSAWQAKFDELS
AKAIKSSVLKRSLDDIKLELEKLKTREIQFENETIRLQAIKIELAALDAEEEGEVRRLAE
IAEKTGLLATAGEPAACPLCEAELREERLEMVRSKFSDERKAAQAALARLADAKSDKSRE
LTELEHHLSSESSVKSEFVRLSRLEAQLQAELSEAESASKRLPEGEKQIAAIRLQIEKGD
FASEERKTLEVIEQKILGIGYDAQAHLLIQAQVKELEPFENRHQELKQAENLLVQETADL
DKGTGAVIELERRLAKRILEADEQRQLLAQTPSVKAQEITDAEESVKSLVASVNAESERV
GSLKQALEHLASLEISLTRKAAELKQYAADESIYKELQTSFGKNGIQAALIESAVPEMES
EANRLLAKMTDNRMSLKLEMQRSTKKGEIAETFDIKIADELGTRDYDLFSGGEAFRINFA
LRLALSKLLAHRAGAPLRTLIIDEGFGTQDAAGIEKLKEAIASIQDQFDCVLVITHIEEF
KDAFPARIEVFKTADGSDLRINYN
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
ttgattccagtccgtcttaaaatgcgaaatttcctcccgtaccgcggggatttagccagt
atttcctttgacggcatccatttggcatgtataaccggcgacaatgggtctggaaaatct
tcgataatcgatgccatgacctgggctctctggggaaaatcccggcttcgaagtaaaacc
acgtcagatgatgatctgataacccagggagagaccgaaactgagatcacgtttgatttc
cgcaccggcgatggccagatctacagggtcgcgcggcggagggctaaaccgaaaaagcct
ggcacctcaggtcagagcaccttgaacttattccttggtcctcaggaaggctttagaaat
atctccggcaatacgatttctgaaaccgaagaaaagattaataatatccttcaccttgag
tacgaaacatttgtgagcagcgcctatctcaaacagggcgaagctgatcatttcaccgaa
cttcggcctaacgaacgcaaagatattctcgtcggtattctcggtttggacatctacgat
gacctgtcacaaaaagccagggacaaggcaaatgaagcgacggctgccaaaaacatgata
ggcaccggcatcgaacttgagcaaaagcagcttgagcgtaagccggaactggaatccgct
ttaagctccactcaaaaacgcctttcggagacgaacagattgttatccgaagctcgtcta
accctggatagtttaagatcatcctggcaattgatccaaacccgagaacaaatgctgcgt
caagccgatttagcggtaagagatattgaaaccgacttaaagttgagaaacaatgatctg
ttggagatagaaaaacggatcaaaattcatcaggcgattgccgatggcaagcctgaggtc
attgaaggttattcccggcttcaatcggcgcgccaggcgaacgaggacaatcaccggaaa
ctcactgaattacgagcccttgagcaacaactccgtaaacttgagcaacagatctccgaa
tcccgtcaccttcttgtaaacaaacaatcggcgtggcaggcgaagttcgacgagttgtca
gccaaggcgatcaaatcgagcgtgttaaagcgttcgctggatgacattaaattggaactt
gagaaacttaaaacgagggaaattcaattcgagaatgagaccattcgccttcaagcaatc
aagatcgagttggctgcgcttgatgctgaagaggaaggcgaggtccgccgattggcagaa
atagcggaaaaaaccgggctgctcgctacggcaggtgaaccagcggcatgcccgttgtgt
gaagctgaactccgtgaagaacgattggaaatggtgcgatcaaaattctctgacgaacgc
aaagctgcgcaagctgcgttagcccggctggccgatgcaaaaagcgataaatccagggag
ttgactgaactggagcaccacctctcctcggaatcgtccgtaaagtctgagtttgtacgg
ctgagccggctcgaagcacagttacaggcagaactgtcggaggcggaatcagcttcaaaa
cgccttcctgagggtgaaaaacagatcgccgctatcaggctgcagatcgaaaaaggtgat
ttcgcctctgaggaacgcaagacgctggaagtcatagagcaaaagatcctggggatcggt
tatgacgcccaggcgcacctcctaatccaggcacaagttaaagaacttgaacctttcgaa
aatcgtcatcaagagttgaagcaagccgagaaccttcttgttcaagagacagccgatctg
gacaaaggcaccggcgccgtaattgaactcgaacggagactcgcaaagcgcatcctagaa
gctgatgaacaaaggcagttgctggctcagactccgtcggtcaaggcccaggaaataact
gacgccgaagagtctgtaaaatccctggtggcgtcagtaaacgctgaatctgaaagagtg
gggagtctgaagcaagctctggagcatcttgccagcctggaaatatctctcacccggaaa
gctgccgaactgaagcaatacgctgctgatgaatctatctacaaagaacttcagacttca
ttcgggaagaacggtattcaagccgccctgatcgagagcgccgtcccggaaatggaatca
gaggccaaccggttgctggcaaaaatgactgataaccggatgagtttgaaactcgaaatg
caacgttccaccaaaaagggagagatagccgaaacctttgatatcaaaatagcggatgag
ctcggtacccgggattatgatcttttcagcggcggggaagccttccgtattaatttcgcc
ctcaggctcgctttatcaaaattactggctcaccgcgcgggcgccccactccggactcta
atcatcgacgagggtttcggtacccaggacgctgcgggcattgaaaaattgaaagaagct
atcgcttcgatccaggatcaatttgattgtgttctggtcatcacccatatcgaagaattc
aaggatgcgttcccggcgcggatcgaagttttcaagaccgctgacgggagcgatctccgg
atcaattacaattag
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