Dehalogenimonas formicexedens: Dform_01185
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Entry
Dform_01185 CDS
T04654
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dfo
Dehalogenimonas formicexedens
Pathway
dfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dform_01185 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfo03019
]
Dform_01185 (pnp)
03016 Transfer RNA biogenesis [BR:
dfo03016
]
Dform_01185 (pnp)
Enzymes [BR:
dfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Dform_01185 (pnp)
Messenger RNA biogenesis [BR:
dfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dform_01185 (pnp)
Transfer RNA biogenesis [BR:
dfo03016
]
Prokaryotic type
tRNA degradation factors
Dform_01185 (pnp)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KhpA-B_KH
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
APV44517
UniProt:
A0A1P8F7S3
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All DBs
Position
1131820..1134021
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AA seq
733 aa
AA seq
DB search
MASIHTFERTIGGRKLVIEHGKLAWQANGAVTLRYGDTEILATAVVAKEAKPGTDFLPLT
IDVEERMYAAGKIPGGFIRREGRATEAATLASRLADRPIRPLLPKYWRREIQVILTVLAA
DQENDPDVLGVIGASCALGISEMPFEGPISAVHVGYINGEFVLNPTFSQLPESKLDVVVA
STKHAVTMLEAGARETPEALMLEAIRFGHAANQEIIALQEEVIAAVGKTKWHVDPPVVDE
ALVQKISIAIDDRLPGAFYQADKAQRTENLEKLSQELIADLGEEFETAAIMAAYDKKIRK
LVRSTALDKNERVSGRGITEIRELSADVSILPRVHGSALFSRGMTQILNVITLGSLQMEQ
KLDNISPEETKRYIHHYNFPPYSTGETKRLGGQGRREIGHGALAERALLPVIPSESEFPY
AMRLVSEAVSSNGSTSMASTCASSLSLMDAGVPIKKAVAGISIGLITDDENRDRFVTLTD
IEGLEDNYGDMDFKVAGTRDGITAIQLDIKLKGISFAIIEKTLSQAREARMVILDVMDKS
ISQPRAELSPFAPRMYKLKIDPGKIGTVIGPGGRVIRSIIDETKTTIDIEDDGTVIIGAT
DAAAANKAIAIVEGLTKDVEPGSVYTGKVTRIMSFGAFVEILPGKEGMVHISELANRRVD
KVEDVVKLGDVIQVKVTEIDSQGRINLSRRALLPPPTAEEQEAMKRQGPPPGGFPRSAPG
APMDRGGRPPFRR
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
ttggcatcgatccacacttttgaaagaaccatcggcgggcgcaagctcgttatcgaacac
ggcaaactagcctggcaggccaacggcgccgtgaccttgcgttacggcgataccgaaatt
ttggccacggcggtcgtcgctaaagaagccaaacccggaaccgacttcctgccgttgacc
atcgacgtcgaggaacgaatgtatgccgcgggcaagatccccgggggctttatccgccgt
gaaggccgggccaccgaagccgccaccctcgccagccgcttagccgatcgccccatccgt
ccgctgctgcccaagtactggcggcgcgaaatccaggttatcctgaccgtgctcgccgcg
gatcaggagaacgacccggacgtcctgggcgttatcggtgcctcctgcgccctgggcata
tccgaaatgcctttcgaagggcctatttcagcagttcatgtcggctatatcaacggcgaa
tttgtgctcaacccaaccttttcccagttacccgaaagcaagcttgatgtggtcgttgcc
agcaccaagcatgccgttacaatgctggaagccggcgctcgggagacgccagaagcgctg
atgctggaggctatccggtttggccatgccgccaaccaggagataatcgcccttcaggaa
gaagtgatcgccgccgtcggcaagactaagtggcatgtagatccccccgtcgtggacgag
gctctggtgcagaagatatcgatcgccatcgacgacaggctacccggggctttctaccag
gcagacaaggctcagcggaccgaaaaccttgaaaaactgtcgcaggaactgatcgccgac
ctgggtgaagaatttgaaaccgccgccataatggccgcctacgacaagaagattcgcaag
ttggtacgttcgaccgcccttgacaagaatgaacgtgtctcaggccgcggcattaccgag
atccgggaactatccgccgacgtgagcatcctgccccgcgttcacgggtccgcccttttt
tctcgaggtatgacccagatcctgaacgtcataacccttggttcactccagatggaacag
aaactggacaacatctctccggaagaaaccaagcggtatatccaccattacaatttcccg
ccctactccaccggtgagaccaagcgtctcggcggtcagggccgccgtgaaataggtcat
ggcgccttggctgagcgggcattactgccggtcatcccatcggagtctgagttcccctac
gccatgcgccttgtttcggaagcggtatcttccaacggttcgacctccatggcctcaacc
tgcgcctcaagcctttcgctgatggatgccggggtgcctatcaagaaagccgtggccggt
atctctattgggcttataaccgacgacgaaaaccgggacaggttcgtgaccctgaccgat
atcgaagggctcgaagacaattacggcgacatggacttcaaggtagccgggacgcgtgac
ggcatcaccgccattcaactggatatcaagctcaagggcatcagcttcgctatcatcgaa
aaaacgctgtcgcaggccagagaagcccgcatggttatacttgatgtcatggacaagtct
atttcgcaacctcgcgccgagctttcgcccttcgcgccacgaatgtacaagctgaagatc
gatcccggtaagataggtaccgtcatcggccccggcggacgggtaatccggtcgatcatt
gatgagaccaagaccactatcgatatcgaagacgacggtacggtgatcattggagcaacc
gacgctgccgccgccaacaaggccatcgccattgtcgaaggcttgaccaaggacgtcgag
cccggaagcgtttacaccggcaaggtcacccgcatcatgagctttggcgctttcgtggaa
attttgcccggcaaggaaggaatggtccatatctccgagctcgccaaccgccgggtcgac
aaagttgaagacgtggtcaaactaggcgacgttatccaggtgaaggtcaccgagatcgat
tcccagggccggatcaacctttcccgccgcgctttgctgcccccgcctaccgcggaggaa
caggaagcgatgaagcggcagggcccacctcccggaggcttcccccgctcggctcccggc
gcgccgatggacagaggcggaagaccacctttcaggcggtaa
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