Dehalogenimonas formicexedens: Dform_01347
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Entry
Dform_01347 CDS
T04654
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dfo
Dehalogenimonas formicexedens
Pathway
dfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dform_01347 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfo03400
]
Dform_01347 (mfd)
Enzymes [BR:
dfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dform_01347 (mfd)
DNA repair and recombination proteins [BR:
dfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dform_01347 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
APV44671
UniProt:
A0A1P8F869
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All DBs
Position
1277514..1280954
Genome browser
AA seq
1146 aa
AA seq
DB search
MTELHGLFDLLSEEPHYKEWLAAAKKPARTSSRISVIEAARPYLTGSLFRDLKRPILVIT
SQAEKARDLTEQIALWLGDLEVQLFPQPELLPYQRAAVDRATELETVSALSSLAGLPQKK
PLVTVISLDALARWAPKPDSFRNGWLHLTAGAEYPPLELVAALDKLGYQSEHLVEAPGTY
SRRGGIVDIFPPTEDSPIRLEYFGDTIESLRTFDPATQRSSKRLESAVVGPATLLLDIGQ
IPDIDLGGASEEMRPVFTEELEQLKRGSRPETAAFWAPYTNSSTILNYLSDNTLVIVDEP
DSVEQAAQFFRDEAECLRAEKTSAGELPNRYPQPYIEWATLKKSLAHFQSVELASWGTGA
GGVVELPISPSPSYAGRLPAFFKKAQELKNQGARLIVVSYQSDRLKELFSEEHVDFSFAE
GLGKPPAKSAITLLHGLLGHGWTLSGETYLFTDNELFGFVKERRWTTRRLASSKRLMLPE
LEPGDYVVHVDHGVARFAGTVTMEVSGARREYLQLEYAGEDKLYVPTDQVDRVSRYIGGE
GEAPTLNKLGTQEWARSKERAQEAAREVAAELIELYAARQIVPGYAYSRDTLWQQELEGS
FPYVETPDQASALSDVKEDMEKPRPMDRLILGDVGYGKTEVALRAAFKAVMDGKQVAVLV
PTTVLAQQHYSTFRARLAAFPVKIEVISRFRSDREQTAILDALEKGEIDIIIGTHRLLQP
DVRFKKLGMLIIDEEQRFGVMHKEFLKRMRQEVDVLTLSATPIPRTLHLSLVGVRDMSVI
ETPPNERLPIKTFVAGYDDHLVREAILREKERNGQVFFVHNRVQSIYFIAERLRKLVPEA
SFIVGHGQMPEGELEAAMAQFAAGEVDVLVCTTIIESGLDVPNANTLIVNQADKFGLTQL
YQLRGRVGRGANLAYAYFLYEKGKRLTGDAEKRLRTIFEASELGAGYGIAMKDLEIRGAG
SLLGTRQSGHISAIGFNLYTQMLSEAVEEQKTKRSGKEVELLKSSKIPPPTIELPLTAFI
PESYIPEESLRLELYQRLAAIKSEKEIADFERELVDRFGQTPVEAQNLSYIIRLRLMGLK
AGIKAIGMESGLIAITFLPGIVTDLKKISPLKDGLRASTNKVWIDYLRLGSRWRELVEET
VWRLGK
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagttgcacgggctgttcgaccttctatctgaagagccgcattacaaagagtgg
ttggcggccgccaaaaagccggcacgcacctcatcgcggatctccgtgatcgaggccgcc
cggccgtatctcaccggcagccttttccgtgatttgaaacgtccgatcctggtcatcaca
tcgcaggccgagaaagcccgggacctcaccgagcagatagccctgtggctgggcgacctc
gaggtgcaactctttcctcaacccgaactcctgccctaccagcgggcggcggtggaccgg
gcaacggaacttgagacggtcagcgcgctttccagcctggcgggactgccgcaaaaaaag
cccctggtcaccgttatctcgctcgatgccctggccaggtgggcgccaaaacccgactct
ttccggaacggctggctccacctcaccgccggcgccgaatacccgccgctcgaactggtc
gccgcgctggataaactcggctatcaatcagagcacctcgtcgaagcgccggggacgtat
tcccggcgcggcggcatcgtggatatattcccgccgaccgaggattccccgatccgcctc
gagtactttggcgatacgatcgagagcctccgcaccttcgacccggccacgcagcgctcg
tcgaagaggctggagagcgccgtcgtcggtccggcgacactgctcctggatatcggtcaa
atcccggatatcgacctcggcggcgcgagcgaggagatgcgcccggtattcaccgaggaa
ctggagcaacttaaacgcggcagcaggccggaaaccgccgccttctgggcgccctatacc
aatagctcgaccattctgaactatctttccgacaacacgctggtgatcgtcgacgagccg
gactcggtggaacaggcggcccagttcttccgcgacgaagccgaatgcctgcgcgccgaa
aagacctccgccggggaactgccaaatcggtaccctcaaccttacatcgagtgggctacc
ctcaaaaagtccctcgcccacttccagagcgtcgaactggcgtcgtggggcaccggcgcg
ggaggcgtcgtcgagctgcccatctccccgtcgccgagctacgccggcaggctgccggcc
ttcttcaaaaaagcccaggaactgaaaaaccagggcgcccgcctgatcgtcgtcagctac
cagtccgaccggctgaaagagcttttcagcgaggaacacgtcgatttctcctttgccgaa
ggcctgggcaagccccccgccaaaagcgccatcaccctgctgcacggcctgctcggccac
gggtggacgctgtccggcgaaacgtacctgttcaccgacaacgaactcttcggctttgta
aaggaacggcggtggacaactcgccggttggcaagcagcaaacggcttatgctcccggaa
ctcgaacccggcgactacgtggtgcacgtcgaccacggcgtcgcccggtttgccgggaca
gtcaccatggaggtctccggcgcccgccgcgagtacttgcaactggagtacgccggcgag
gacaagctgtacgtgcctaccgaccaggtcgaccgcgtctcccgctacattggcggggag
ggcgaggcgccgacgctgaacaagctcggcacccaggaatgggcccgctccaaggaacgg
gcccaggaagccgcccgggaggtggccgccgaacttatcgagctctacgccgcccggcag
atcgtgcccggctacgcctactcccgcgacaccctgtggcagcaggaactggagggctcc
ttcccgtatgtcgagacgcccgaccaggcatcggcattgtccgacgtcaaagaggacatg
gaaaagccccgccccatggaccgcctcatcctcggcgacgtcggctacggcaagaccgag
gtggccttgcgcgccgccttcaaggcggtcatggacggcaagcaggtggcggtactggtg
cccaccaccgtcctcgcccagcagcattattcgaccttcagggcccgcctggcggccttc
ccggtcaagatcgaggtcatctcccgcttccgcagcgacagggagcagaccgccatcctc
gatgccctcgaaaagggcgagatcgacatcatcatcggcacgcaccggctgctgcagccg
gatgtcaggttcaagaagctgggcatgctcatcatcgacgaggagcagcggtttggcgtg
atgcacaaggagttcctgaaacggatgcgccaggaagtcgacgtgctgaccctttcggcg
acgcccatcccgcgcaccctgcacctgtcgctcgtcggcgtcagggacatgagcgtcatc
gagacgccgcccaacgaacgcctacccattaagaccttcgtcgccgggtatgacgatcac
ctggtgcgcgaggccatcctgcgggagaaagagcggaacggccaggtcttcttcgtccat
aaccgcgtccagagcatctatttcatcgccgaaaggctgaggaaactggtgcccgaggca
tcgttcatcgtcggccacggccagatgccggagggcgaactcgaggcggccatggcccag
ttcgcggcaggtgaggtcgacgtactcgtctgcaccaccatcatcgagagcggcctggac
gtgcccaacgccaacaccctcatcgtcaaccaggcggacaagttcggcctgacccagctt
taccagctcaggggcagagtcggccgcggcgccaacctggcctacgcctacttcctgtac
gagaaaggcaagcgcctcaccggagacgccgaaaaacggctgaggaccatcttcgaggca
tcggaactgggggcgggctacggcatcgccatgaaggacctcgagatcaggggcgcggga
tcgcttctcggcacgaggcagagcggccatatctcggccatcggcttcaatttgtacacc
cagatgctgtctgaagccgtcgaagaacagaagaccaagcggtccggcaaggaagtcgag
ctcttgaagtcgtcgaagataccgccaccgaccatcgaactgccgctgaccgccttcatc
ccggagagctacatccccgaggaatcgctcaggctggaattgtatcaacggctggccgcc
atcaagagcgagaaagagatcgccgatttcgaacgcgaactcgtcgaccgcttcgggcag
acgcccgtcgaggcgcagaacctgtcgtacatcatccgactgaggctgatggggctcaag
gccgggatcaaggctatcggcatggagagcgggcttatcgccatcaccttcctgccgggg
atcgtaaccgatttgaagaagatatcgccgctcaaggacggcctccgcgcttcgaccaac
aaggtctggatagattacctgcgactgggcagccggtggcgggaactcgtggaagagacg
gtgtggagactggggaaataa
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