Dehalogenimonas formicexedens: Dform_01495
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Entry
Dform_01495 CDS
T04654
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dfo
Dehalogenimonas formicexedens
Pathway
dfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dform_01495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfo03019
]
Dform_01495
Enzymes [BR:
dfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dform_01495
Messenger RNA biogenesis [BR:
dfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dform_01495
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
TerL_ATPase
AAA_22
Flavi_DEAD
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
APV44817
UniProt:
A0A1P8F8M7
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All DBs
Position
1429900..1431153
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AA seq
417 aa
AA seq
DB search
MTFEQFNLHPAIMDGIRSVGYSEPTPIQAQAIPPALEGRDLIGLAQTGTGKTAAFVLPML
QKLLRGPRGKLRGLIISPTRELAEQIYESIKGLSQHTGIRSMAIYGGVGMDPQKSKLRTG
MDIVVACPGRLLDHVWQGTIDFTDVEMLVIDEADRMFDMGFLPDIRKILKCLMHERQTLL
FSATMPDDVRKLVRDVLNDPVTVQIGQVAPANTVTHALYPVRQDLKTSLLKTLLKQTDMD
SVLVFTRTKHRTERVALALAQSGLKVASIQGNLSQYRRQAALDGFKDGTFKVLVATDIAS
RGIDVSDVSHVINYDMPDTADTYIHRIGRTGRIGKTGDAFTFVCAEDEPMVKSIEKVLKS
PIERRSVDGFKYDAPEPVKTAPPHQPRHTRPQNPASGSDHNRRRTPAFHRRLSPQSI
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgaacaattcaatcttcaccccgccatcatggatggcatcaggtccgtcggt
tactccgaacccacccctatccaggctcaggctataccccccgctcttgaagggcgtgac
cttataggcctggcccaaaccggcaccggtaaaacggcggcgtttgtcctgcctatgctg
caaaaactgttacgcggaccccgcggcaagctccgggggttgatcatttcacccacccgg
gaactcgccgagcagatctatgagtccatcaaagggctgtctcagcacaccggcatccgc
agcatggccatctacggcggcgtcggcatggatccccagaagagcaagctgcgcaccgga
atggacatcgtcgtcgcctgccctgggcggctgctcgaccatgtttggcaggggactatt
gatttcaccgacgtcgagatgctggtcatcgacgaagccgacaggatgtttgatatgggc
tttctgcccgatatccgcaagatcctgaaatgcctgatgcatgagcgccagacccttctt
ttctccgccaccatgccggatgacgtccgcaaactggtgcgcgatgtgctcaatgacccc
gttaccgttcagatcggccaggtagccccggccaacacggtgacccatgccttgtacccc
gtgcggcaggacctgaaaacctcgctgctgaaaactttgctgaaacagaccgatatggat
tcggtgctggtattcacccgcaccaagcaccgcaccgaacgggtcgccttggcgctggcc
caatccggcctgaaggtcgcctccattcaaggcaatctctcccagtaccgccgccaggcc
gctctcgacggtttcaaggacggcactttcaaggtgctggtggcgaccgatatcgcctcc
cgcggcatcgacgtctcggacgtctctcacgtcatcaactacgacatgcccgatactgcc
gacacctacatccaccgcattggacggaccggtaggatcggtaaaaccggcgatgccttc
accttcgtctgcgctgaggacgaaccgatggtgaagtcgatcgaaaaggtgctcaagtca
cccatcgagcggcgcagcgtcgatggtttcaagtacgatgctcccgagccggtgaaaacc
gctccgccacaccagccccggcatacccggccgcaaaatccggcctcgggatcggatcac
aaccggcgccgtacgccggctttccaccgcaggctgagcccgcaatcgatttag
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