Dehalogenimonas formicexedens: Dform_01906
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Entry
Dform_01906 CDS
T04654
Symbol
nfo
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
dfo
Dehalogenimonas formicexedens
Pathway
dfo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Dform_01906 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfo03400
]
Dform_01906 (nfo)
Enzymes [BR:
dfo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
Dform_01906 (nfo)
DNA repair and recombination proteins [BR:
dfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Dform_01906 (nfo)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
APV45221
UniProt:
A0A1P8F9S0
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All DBs
Position
complement(1809776..1810618)
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AA seq
280 aa
AA seq
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MTMLTFGTAGIPASTKASGDTVAGLKRIAELGLGGMEIEFVRGVYLKDHTAAPVAYVGKK
LGLKLSCHAPYYLNLNHADEVRRRQAGGVLHHAASMAAKAGAKSVVFHAGYYLKDSPEIV
YDAIKAQIEVVLDKLQGEGTLVKLRPELAGKISQFGTLAEILRLSKELPGVAPAIDFAHL
HASTGRYNSYAEFSEVLNRVGDTLGREALDDLHLHVSGIEYAKTGERRHLNLADSDFHYD
ELLQALTDVKAGGLLICESPNIEVDTLLLQRTYLDLSPRM
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgctcaccttcggcaccgccggcattccggcctcgacaaaagccagcggcgac
accgttgccggcctcaagcgcattgcggaactcgggctcggcggcatggagatcgaattc
gtccggggcgtttatctcaaggaccatacggcggcgcccgtggcttacgttggcaagaag
ctcggccttaaattatcgtgccacgcgccttactacctcaatctcaaccacgccgacgag
gttcggcggcggcaggcgggcggggtcctccaccatgcggccagcatggcagccaaggcc
ggggcaaaaagcgtcgtctttcacgccggctactaccttaaagacagcccggagattgta
tatgacgccatcaaggcgcagatcgaggtcgtgctggataagctgcaaggagaaggtacc
ttggtgaaactcaggcctgaacttgcgggtaaaatatcccaattcggtactctggcggag
atcctgaggctttccaaagaattacccggcgtagcgccggcgatagatttcgcccatctc
cacgcgtctaccgggcgttacaattcctatgcggaattctccgaggtgctcaaccgcgtc
ggcgataccctggggcgggaagccctcgatgatctccatcttcatgtctcaggcattgaa
tacgccaaaaccggcgagcggcggcatctcaacctggccgattccgatttccattacgat
gaattgctccaggccttgacagatgtgaaagcgggcgggttgctcatctgcgagagcccg
aatattgaagtggacacccttcttttacagcggacttaccttgatttgtcgccaagaatg
tga
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