Dehalogenimonas formicexedens: Dform_02096
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Entry
Dform_02096 CDS
T04654
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dfo
Dehalogenimonas formicexedens
Pathway
dfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dform_02096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfo03021
]
Dform_02096
03019 Messenger RNA biogenesis [BR:
dfo03019
]
Dform_02096
Transcription machinery [BR:
dfo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Dform_02096
Messenger RNA biogenesis [BR:
dfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dform_02096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
ATPase_2
NACHT
Spore_III_AA
AAA
PRIMA1
Motif
Other DBs
NCBI-ProteinID:
APV45405
UniProt:
A0A1P8FAB3
LinkDB
All DBs
Position
complement(1984576..1985931)
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AA seq
451 aa
AA seq
DB search
MTEIDPVNSIEPVEVQRTPEPPAPPPPPPPLALSVLETMSREDLLELAKRMKLVGVTGAK
KQEIVLRLLQAFTEQQGNIFCSGILEIMPDGYGFLRQASLLPSNSDIYISQSQIRRFGLR
TGDMIIGQSRHAKPGEKYYSLLRVEAINDLNPDVAKQRPHFGALTPTFPDKMINLETEMG
QLSTRLINLIAPIGRGQRGMVVSPPKAGKTMLLKNIANAATGNYNDIHLMVVLIGERPEE
VTDMRRSVKGEVMAATFDEAVENQTRVAELALERAKRMVESGKDVLILLDGITRLTRAYN
LAMPPSGRTLSGGLDPVALHPAKKFFGAARNTAEGGSLTIIATCLVDTGSRMDDLIYEEF
KGTGNMELHLDRRLAERRIFPAFDIPRSGTRREELLMSDQTFRQVQLLRRMVALIADDAT
HFAEVTERVLDKLKKSRNNTEFLDNLQRGKD
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaatcgatcccgtcaacagtattgaacccgtcgaggttcagcgaacccccgaa
ccccccgccccgccgccgccgccgccgccgctggccttgtccgtcctggagacgatgagc
agggaagacctgctcgaactggccaagcggatgaagctggtcggtgtcaccggcgccaag
aagcaggagatcgtgctgcggctgctccaggcgttcaccgagcagcagggcaacatcttc
tgctccggcatcctggagatcatgccggacggctacggcttcctgcgccaggcgtcgctg
ctgccgtcgaactccgatatctatatctcccagtcccagatccgccgcttcggactgagg
accggcgacatgatcatcggccagtcgcgccacgccaagccgggcgagaaatactattcg
ctgcttagagtcgaagccatcaatgaccttaacccggacgtcgccaagcagcggcctcat
ttcggcgctctcactcccacgttcccggacaagatgatcaacctcgagaccgaaatggga
cagctttcgacccgcctcatcaacctcatcgcccccatcggccggggccagcgcggcatg
gtcgtatcgccgcccaaggccggcaagacgatgcttctcaagaatatcgccaacgccgcc
accggcaattacaacgacattcacctgatggtcgtccttatcggcgagcgcccggaagaa
gtcaccgacatgcgccgctcggtcaagggcgaggtcatggccgccaccttcgatgaagcc
gtggagaaccagacccgcgtcgccgagctggccctcgagcgcgccaagcgcatggtggaa
tccggcaaggacgtcctgatcctgctcgacggcatcacccgcttgacccgcgcctacaac
ctggccatgccgccatccggccgcaccctgtccggcggcctcgaccccgtcgccctgcac
ccggccaagaagttcttcggcgccgcccgcaataccgcggaaggcggcagcttgaccatc
atcgccacctgcctggtcgacaccggctcccgcatggacgacctgatctacgaagagttc
aagggcaccggcaacatggaactgcacctcgaccgcagactggctgaacgcaggatcttc
cccgccttcgacatcccgcgctccggcacccgccgcgaggaactgcttatgtcggatcaa
actttcaggcaggtccaattgctccggcgcatggtcgccctcatcgccgacgacgccacc
cacttcgccgaggtcaccgagcgcgtcctggacaagctcaagaagagccgcaacaacacc
gagttcctggacaacctgcagcggggcaaagactaa
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