Dyadobacter fanqingshengii: NFI81_06595
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Entry
NFI81_06595 CDS
T08895
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dfq
Dyadobacter fanqingshengii
Pathway
dfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFI81_06595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfq03019
]
NFI81_06595
Enzymes [BR:
dfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NFI81_06595
Messenger RNA biogenesis [BR:
dfq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NFI81_06595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
AAA_19
Helicase_RecD
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
USJ37443
LinkDB
All DBs
Position
1640206..1641441
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AA seq
411 aa
AA seq
DB search
MKFEDYHIAPEIKRSLDTAGFKKPTDIQFKAIPAIMKGEDVLAIAQTGTGKTAAFAIPVI
DKLHKQKVSSRSEGIKCVVMVPTRELAIQITEVFAKLAQHTRVKAFSVFGGVEQGPQIAQ
LEKGIDVLVSTPGRMFDLVSQGHIKLDRIEILILDEADHMLDLGFIKDIQDLIKFLPKNR
QTLFFSATINEKIKKLAYSLVRNAIRIQISPNDRVAKNITHSVAFVAMDDKRFFLERVIK
ENPDSKILVFVRTKVRAERVFNALERMEIVSMTIHGDKEQADRLTALNEFKQGNVKVLIA
TDVSARGIDIANVDYVVNYDLPEQAENYVHRVGRTGRGTQKGRAVSFCSPEEKPMLEEIQ
TYLEKPIDVLSISTTDYSQTIDFTADTTDDLKSLMKEVEDYETAKRKKKKK
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaagattaccacattgcccctgagatcaaaagaagcctggacacagccgga
tttaaaaaaccgaccgacattcagttcaaggctattcctgcgatcatgaagggcgaagat
gtgctggccattgcgcaaacgggcacaggaaaaaccgccgcttttgccattccggttatt
gataagttgcacaaacaaaaggtttccagtcgctcagaaggcattaaatgtgtggtgatg
gttcctacccgggagcttgcaatccagattacggaggtttttgccaaactcgcgcagcat
accagagtgaaagcattcagtgtgtttggcggcgtagaacagggtccgcagatcgctcag
ctggaaaaaggcatcgacgtcctggtttccacccccggaaggatgttcgacctcgtaagc
cagggccacattaaactcgaccgaatagaaattctgatcctcgacgaagccgatcatatg
ctggatctgggatttattaaggatattcaggaccttataaaatttttacccaagaacaga
cagacgctgtttttctcagctacgatcaacgaaaagatcaaaaaactagcctactcgctg
gtaagaaacgccattcgcatccagatttcacccaatgatcgtgtcgcgaaaaatatcacg
cattccgtggcttttgtggctatggatgacaaaaggttctttttggaacgtgtgattaaa
gagaatcccgatagcaagatccttgttttcgttcgtacaaaagtgcgcgcggaaagggtt
tttaacgcattggaaagaatggaaatcgttagcatgaccattcacggcgacaaagaacaa
gccgacaggctaacagcgctgaacgagtttaaacaaggaaatgtaaaagtgctgatcgcc
acggacgttagcgcaaggggaattgacattgccaatgtggattacgtcgtgaactacgat
cttcccgagcaagccgaaaactacgtgcacagggtgggacgcacgggccgcggaacgcaa
aaaggccgcgccgtttccttttgcagccccgaggagaagcctatgctggaagaaattcaa
acatatctggaaaaaccaatcgacgtgttgagcatcagtacaaccgattactcacaaaca
atcgacttcaccgctgacactaccgacgacctgaaatcattgatgaaggaagtggaagat
tacgagacagcaaaaaggaaaaagaagaagaaataa
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