Dyadobacter fanqingshengii: NFI81_07160
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Entry
NFI81_07160 CDS
T08895
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dfq
Dyadobacter fanqingshengii
Pathway
dfq03030
DNA replication
dfq03430
Mismatch repair
dfq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NFI81_07160 (dnaE)
03430 Mismatch repair
NFI81_07160 (dnaE)
03440 Homologous recombination
NFI81_07160 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfq03032
]
NFI81_07160 (dnaE)
03400 DNA repair and recombination proteins [BR:
dfq03400
]
NFI81_07160 (dnaE)
Enzymes [BR:
dfq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NFI81_07160 (dnaE)
DNA replication proteins [BR:
dfq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NFI81_07160 (dnaE)
DNA repair and recombination proteins [BR:
dfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NFI81_07160 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
MCM10_OB
T2SSK
tRNA_anti-like
Motif
Other DBs
NCBI-ProteinID:
USJ37550
LinkDB
All DBs
Position
complement(1760416..1764054)
Genome browser
AA seq
1212 aa
AA seq
DB search
MQFSHLHCHTQFSLLDGAADIKKLFKKAKEDNMPAVAITDHGNMFGVFEFVAEGNKQGIK
PIVGCEFYVVEDRHIRQFTKDKKDVRHHQLLLAKDELGYKNLVKMCSLGFIEGMYGKYPR
IDKELIVKYHKGLIATTCCIGAIIPKTIIRKGEAEAEKEFKWWLDLFGEDFYVELQRHEI
RDQYIVNEVLIRFARKYNVKIIASNDSHYVDQEDWNAHDILLCINTGDKQSTPSAKDFDD
DKGIPKGSRFAFFNDQFYFKNTSEMMKLFNDLPESLDNTNEIVDKIKALDLRKDILLPNF
PIPDEFKTHTLSEMAGKKELTADVLNQWEYLKHLTFVGAKFKYGTITPEIEDRLNFELQT
IRNMGFPGYFLIVADFIDAGRKMGVFIGPGRGSAAGSVVAYCTGITNIDPIKYDLLFERF
LNPDRISLPDIDTDFDDEGRQKVIDYVVKKYGYNQVAQIVTYGTMAAKSAIKDVARVMDL
PLADANMLAKLVPDKPTYNMTLNRIFTAPLEGEGSLTKKEGIAPEELDNVKKMRAIALGN
DLQASVLQEARRLEGTVRNTGIHAAGIIIAPSDLTEIIPVSTSKDSDFLITQYQGKIIED
AGVIKMDFLGLRNLTIIKEALRLIKQNHNVDIVIDDIPLDDPKVFELFQRGETNAIFQFE
SDGMKKYMRDLIPDRFEHLIAMNALYRPGPIAYIPNFIRRKNGLEEVTYDLPELEEYLAD
TYGITVYQEQVMLLSQKLGGFTKGQADTLRKAMGKKQIETLNKMKGDFMKGGAEKGLDAK
KLEKIWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYTAEYMSAVLTSSLGNIEKITF
FMEECKAQGLKVLGPDINESDRQFNANKKHEIRFGLAGVKGSGDAAVEAIIEERNQNGPF
KDIFDFMTRVNLRTVNKKTIESLAYAGGFDCFPEYHRAQYFATDANDNLTFIEKLIRYAN
KAQGGGVVDLFSHSGGGAEIAKPKAADIVAWDDLAKLRYEQEVVGFYISGHPLDTFRVEL
DNFCNCTVDKVMEIGENEKAPKYFGKEISVGGIVTSAQERMSRNGSLFMIFKIEDYRGSM
EMLLGGEDYIRFKNYLQVGQFLYIKGKVQNRWKQEDQFEFKISQIQLLTEIRDKMCRKIR
INLTLDQIDAQFIHLLNETFGNHPGACAVNMTVIDPETHLEVEMVSRGYRVAPSNELFKV
LNGFHGVKFFLN
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgcagttttcacacttgcactgccacacgcaattttcccttctggacggtgcggcggat
ataaagaagcttttcaaaaaggccaaggaagataacatgcctgcggtggccatcacggat
cacggtaacatgttcggcgtctttgagttcgtggcggaaggcaataagcagggcatcaag
ccgattgtgggatgcgaattttatgtggtggaagaccgacatattcggcagtttacaaag
gataaaaaggacgtacggcaccaccagttgctgcttgctaaggatgaattgggatacaaa
aacctggttaaaatgtgttcactcggttttatcgagggaatgtatggaaaatatccgcgg
attgataaagagctgattgtcaaatatcataaaggcctgattgcgacgacttgctgcatt
ggtgcaattattccaaaaaccattatccgtaaaggtgaagccgaagcggagaaggaattt
aaatggtggctggatctgtttggcgaagacttctacgtagaattgcaacgccatgaaatc
cgggatcaatacattgttaatgaggttcttataagatttgcaagaaaatacaatgtgaag
atcattgcctccaatgattcacattatgtggatcaggaagactggaatgcgcatgatatt
ttgctttgtatcaacacgggcgacaagcaaagcacgccttctgcgaaggattttgatgat
gataagggcattccaaagggctcccgtttcgcgttctttaatgaccagttttatttcaaa
aacaccagcgagatgatgaagctgttcaacgacttacccgagtcgctggacaatacaaat
gagattgttgataagataaaagcactggatcttcggaaagatatcctgctgcccaatttc
cccatccctgacgaatttaagacgcacacattgtcggaaatggctgggaaaaaggagctt
acggccgatgtattaaaccaatgggagtatttaaaacaccttacttttgtaggcgctaaa
ttcaaatatggaacaataacgcccgagattgaagaccgtttgaacttcgagctgcaaacc
atccggaacatgggtttccctggttacttcctcattgtggctgattttattgatgcaggc
cgtaaaatgggcgttttcattggcccgggccgcgggtctgcggccggctctgtggtggct
tactgcacgggaatcaccaacattgatcccattaaatatgatctgctttttgagcgtttc
ctgaatcccgaccgtatttcacttcctgatattgatacggacttcgatgatgaaggccgt
cagaaagtaattgattatgtggtaaaaaaatatggttacaaccaggttgcgcagattgtg
acttatggtacaatggccgcgaaatccgcgatcaaggatgtggcgcgtgtgatggacctg
ccactcgcagacgccaatatgctcgcgaaactcgttcctgacaagcctacctataatatg
accctgaaccgcatctttacagcgccgctggaaggagaggggagtttgacgaaaaaggag
ggaattgcgcctgaggaattggataatgtgaaaaaaatgcgcgccattgcattaggtaat
gacttgcaagcgagtgttttacaagaagcaagacgactggaaggaacggttaggaacaca
ggaattcacgcagcaggaattattatcgcgccgagcgatttgaccgagatcattccggtc
agcacgtccaaagattccgattttttgatcacacaatatcagggaaagatcattgaggac
gccggggttattaaaatggactttttgggtctgcgaaacctgaccatcattaaggaagca
ttgcggctgatcaagcaaaatcataatgtcgatattgtcattgacgacattccgctggac
gacccgaaagtgtttgaattgttccaaaggggcgaaactaacgcgattttccagtttgaa
tccgacgggatgaaaaagtatatgcgcgatcttatcccggaccgttttgagcaccttatc
gccatgaatgctctgtatcgtccaggtccgatcgcttacattccgaacttcattcgccgt
aaaaacggcttggaagaagttacttacgatttgcctgaactggaagaatatctggcagat
acatacggaattacggtttaccaggagcaggtaatgcttttgtcccaaaaactgggtggc
ttcacgaaaggacaagctgatacattgcgtaaagcaatgggtaaaaagcagatagaaacg
ctgaacaaaatgaagggcgacttcatgaaaggcggcgcggaaaaaggattggatgccaaa
aagctcgaaaaaatctggactgactgggaggcgtttgcatcctatgcatttaacaagtct
cactcaacgtgttatgcgtttgttgcttaccaaacggcttatttaaaagcacattacacg
gcagaatatatgtcagccgttttaacaagctcactgggcaacattgaaaagatcaccttc
tttatggaggaatgtaaagcgcagggattgaaagtgttagggccagatattaatgagtcg
gacaggcagtttaatgccaataagaaacatgaaatccgttttggactggcgggtgtgaaa
ggaagcggcgatgcagcggtggaggctattattgaagaaaggaatcagaatggtccgttt
aaggatatttttgattttatgacacgggtaaacctgcgcacggtcaataagaaaaccatt
gaaagtctggcctatgcgggtggatttgactgctttcctgaatatcaccgggcacaatat
tttgcgacggatgcaaatgataaccttacttttattgaaaaactgatccgctatgccaac
aaagcgcaaggcggaggcgtggtcgatttatttagtcattccggtggcggtgctgagatt
gccaaaccgaaagctgccgatatcgtagcttgggatgatcttgctaagctgcgctatgag
caggaagttgtaggtttttacatttcagggcatccgttggatacattccgggtggagctg
gacaatttctgcaattgcacggttgataaagtgatggagattggcgaaaatgaaaaggcg
ccgaaatattttggtaaggaaattagtgttggcggaattgtaacgagtgcacaggaacgc
atgtcgcgtaatggcagtttgtttatgatcttcaaaattgaggattaccgcggttcgatg
gaaatgcttttgggcggagaggattacattcggttcaaaaattacttgcaggtggggcag
ttcctttacattaagggcaaagtgcaaaaccgctggaaacaggaagatcagtttgaattt
aaaatctctcaaattcaactcttaaccgaaatccgggataagatgtgccgtaaaattcga
atcaacttgacactggatcagatcgacgcgcaattcattcatttgctgaacgaaaccttt
ggtaatcacccaggtgcgtgtgcggttaatatgactgttatagatcccgaaacgcatctg
gaagtagaaatggtgtcccgcggttacagggttgcgccgtccaatgaactgttcaaagtg
cttaacggatttcatggtgtgaaattctttttaaactga
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