Dyadobacter fanqingshengii: NFI81_12950
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Entry
NFI81_12950 CDS
T08895
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dfq
Dyadobacter fanqingshengii
Pathway
dfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFI81_12950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfq03019
]
NFI81_12950
Enzymes [BR:
dfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NFI81_12950
Messenger RNA biogenesis [BR:
dfq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NFI81_12950
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Utp25_C
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
USJ38656
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All DBs
Position
3104869..3106011
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AA seq
380 aa
AA seq
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MTFQDLKLIEPIAKALQEEGYTTPTPIQAKAIPIILDQKDLLGCAQTGTGKTAAFAIPML
QLLHNNPVGKFEKSHIRALILTPTRELAIQIGESFAAYGRHTGVKHTVVFGGVGQKPQTD
ALQRGVDVLIATPGRLLDLINQGFIKLNQLEFFVLDEADRMLDMGFVHDVKKVIKLLPVK
RQSLFFSATMPPAIVTLANTILRNPLKVEVTPVSSTADTIRQSVFFVDKSDKNSLLLHIL
KDESIATALVFTRTKHGADKVVKVLRKAGVSSEAIHGNKSQNARQNALKNFKSQTTRVLV
ATDIAARGIDVDDLTHVINYEIPNIPETYVHRIGRTGRAGAKGIAFSFCDLDEKVYLKDI
HKLIAKNIPVINDHPYATGR
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgacatttcaagatttaaagctcattgagcctattgctaaggcgcttcaagaagaaggc
tacaccactcccacaccgattcaggcaaaagcgatccccattattctggatcaaaaagat
ttattaggttgcgcgcagacgggcacaggaaaaacggcagcatttgccattccaatgttg
caactgcttcataataatccagttggaaagtttgaaaaaagccacatccgcgcattgatc
cttacgcctacacgcgagctggccattcagattggcgaaagttttgcagcttatggacgc
cataccggcgttaaacacacggttgtttttggtggcgtgggtcaaaaaccgcaaacagat
gcgcttcaacgcggcgtcgacgtgcttatcgcaacgccgggacgtttattagaccttatt
aatcaaggatttataaaactaaaccagttggaattcttcgttcttgacgaagcagaccgg
atgctggacatgggttttgtacatgatgtgaagaaagtcatcaaattgcttcccgtaaaa
aggcaatcgttgtttttctctgccactatgcccccggccattgtcacattggctaacaca
atacttagaaatccacttaaagtagaagttacacccgtttcttcgactgctgacaccatt
cgtcagtctgtgttttttgtagataaatcggataaaaattcgctgttactgcatattctg
aaagatgaaagcattgccactgcgctagttttcacccggacgaaacatggtgcggataaa
gtggtaaaggttttgagaaaagcaggcgtaagctcagaagcgattcacggaaataaatcc
cagaatgcgcgtcagaatgcgctgaaaaatttcaaaagccagacaacccgagttttggta
gccaccgacattgcggcaagaggaattgacgtggatgacctgacgcatgtgatcaactac
gaaatcccgaacattcctgagacgtacgtacacaggatcggacgtacaggtcgtgcaggg
gcgaaaggaattgctttttctttctgtgacctggatgagaaagtgtatctgaaagacatt
cacaagctgattgccaagaatatcccggttataaacgaccatccctacgcaacgggcagg
taa
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