Dyadobacter fanqingshengii: NFI81_13780
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Entry
NFI81_13780 CDS
T08895
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dfq
Dyadobacter fanqingshengii
Pathway
dfq03030
DNA replication
dfq03430
Mismatch repair
dfq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NFI81_13780 (dnaE)
03430 Mismatch repair
NFI81_13780 (dnaE)
03440 Homologous recombination
NFI81_13780 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfq03032
]
NFI81_13780 (dnaE)
03400 DNA repair and recombination proteins [BR:
dfq03400
]
NFI81_13780 (dnaE)
Enzymes [BR:
dfq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NFI81_13780 (dnaE)
DNA replication proteins [BR:
dfq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NFI81_13780 (dnaE)
DNA repair and recombination proteins [BR:
dfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NFI81_13780 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
PG_binding_5
Motif
Other DBs
NCBI-ProteinID:
USJ33779
LinkDB
All DBs
Position
3305824..3308793
Genome browser
AA seq
989 aa
AA seq
DB search
MLLNCHSYFSLRFGTIPEQELLQISRENGYGCIALTDINNTSGCLNFIRMAPKYDIKPIV
GIDFRNGAKQQFVGLAKNNAGFQELNAYLSRHSLLKEAFPDEAPKLEHAVFIYPFENLSA
EKKETLLPNEYIGIAQKDLNRIRFSPLFKQKEKLVVMQPLSFRNKRDFNTHRLLRSIDGN
TLLSKLSPTETAEESEQIMPLKVLEYHFKEKDLDFIIRNTEKLMEECSIHFNFGDDREHQ
NLRVYGESAHDDYQKLTSLSYQALGYRYGEQVTDEIFDRIAMELDLIQKQNFVPFFLVNH
DIVSYARRKGYYYVGRGSGANSIVAYLLNITNVDPIELDLYFERFINMHRKNPPDFDIDF
SWRDREDVTQYIFDTFGKNGQASLLATYSTFQHSAAVRELGKVFGLPAYEIDALSNGKFD
PKKLDQISSLVIKYAGYLQENNQPNHLSIHAGGILISERPIHYFTATDVPPKGFPTTQFD
MVIAEDVGLNKYDILGQRGLAKIKETLEVIRYNRPDEQPIDIDDVKKFKTDPKINDLIKR
AQCIGCFYVESPAMRMLLRKLEVDNYLGLVAASSIIRPGVAKSGMMREYILRHQNPEKVQ
EAHPELLKLMPETYGIMVYQEDVIKVAHYFAKLTLGEADVIRRGMSGKFRGRDEFERVKK
KYFKNCSDMGYEPQTTQEIWNQIASFAGYAFAKGHSASYAVESYQTLFLKAYYPLEYMVA
VLNNGGGFYAPELYLHEARMMGATIMAPCVNHSNAQAVIKGKDIYLGMQFLNEIEEKTIL
KIVSAREQEGEFLSLNNFIDRVAISIEQLTILIRIDAFRFTGINKKTLLWKAHFRLSKTP
SKVPQKQLFKSEVKDYQLPTFHSSPIDDAYDQIELLGFALCSPFDLLKNALPKSVMSKDL
HVYVNREVVQYGYLVAVKNTRTARGETMQFGTFLDQEGQFIDTVHFPQVAVKFNFSVKGV
YKIRGVVTEEFGFLTIEVMEITRMDSATR
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgctactcaactgtcactcttatttcagccttcgttttgggactatccccgaacaggaa
ttgcttcagataagcagggaaaacggttatggctgcattgcactgaccgatataaacaat
acgtccggttgcctgaactttatcaggatggcacctaaatatgacattaaaccaattgta
gggatcgattttcgtaacggggcaaaacagcaatttgtggggttagctaaaaataacgca
ggttttcaggagctgaatgcctacctatcgagacattctttgttgaaagaggcatttccc
gacgaggccccgaaactcgaacacgctgtatttatttacccttttgaaaatctttctgcg
gagaaaaaagagacactattacccaacgaatacattggcattgcgcaaaaagatttgaac
agaatccgcttttcccccttgttcaagcaaaaggaaaagcttgttgtgatgcagccattg
agttttcgaaataagcgagacttcaacacgcaccgccttttgcgttcgatagatggtaac
acattattgagcaaactgtcgccaacagaaacggccgaagaatcggagcaaatcatgccg
ttaaaggtgctcgaatatcatttcaaggaaaaagaccttgatttcatcattcgcaacacc
gaaaagttgatggaggaatgcagcattcatttcaattttggtgacgatcgggaacatcag
aatttgagggtgtatggcgaaagtgcacatgacgactatcaaaaattgacatcactgagt
taccaggcgttgggttatcgatacggtgagcaggtaaccgacgagatttttgaccggatc
gcaatggaactggaccttattcagaagcaaaatttcgtcccatttttccttgttaaccat
gacattgtgagctatgcgcgaagaaaaggctattactatgtcggtcgtggaagtggcgcg
aacagcattgtggcctatttgctgaatatcaccaatgttgacccgattgaactcgacctt
tactttgaacggttcatcaacatgcaccggaaaaatccgcccgatttcgacattgatttt
tcatggcgcgatcgcgaagatgtaacgcagtatatttttgacaccttcggcaaaaacggc
caggcgtcactattggcaacatatagcacatttcaacacagcgcagccgttcgtgagctg
ggtaaggttttcgggttgccagcttatgagatcgacgctttgagcaatggaaaatttgac
ccgaaaaaactggatcagatatccagcctggtgatcaagtatgccggttatttgcaggaa
aataatcagccgaatcatttgagcattcatgcaggcgggatcctgatctccgaacggcct
atacattatttcacggccacggatgtgccgcccaaaggatttcctaccacgcaattcgac
atggtcatcgcggaagatgtagggctgaataaatatgacattctcggacagcggggtctg
gccaagatcaaggaaacattggaagtgatccgttacaaccgcccggacgaacaaccgatc
gacattgatgacgtaaaaaaattcaagaccgacccgaaaatcaacgacctgatcaaacgg
gcccaatgtattggctgcttttacgtggaatcacctgccatgcgcatgctgttgcggaag
ctcgaagtggataattacctcggattggttgcagccagctccattatcaggcctggcgtt
gcaaaaagcggcatgatgcgcgaatatattttacgtcaccaaaaccccgagaaagttcag
gaagcacacccggaattattaaagctgatgcccgaaacttacggcattatggtttaccag
gaagacgtgatcaaggttgcacattattttgctaagctcacgctcggcgaagcggatgtg
atcagacgaggcatgagcggaaaattccgtggtcgtgacgagtttgagcgggtaaagaaa
aagtatttcaaaaactgctccgatatgggttatgagccccagacgacgcaggaaatttgg
aaccagattgcaagttttgcgggctatgcattcgcgaaaggacattcggcgtcctatgct
gtggaaagttaccagacacttttcctgaaagcctattatccattggaatacatggtggca
gtgctgaataacggcggcggattttacgcacctgagctatatctgcacgaagcacgcatg
atgggcgccacgatcatggcaccttgcgtgaaccacagcaacgcccaggcagtgataaaa
ggaaaggacatttatctgggaatgcagtttttgaatgaaattgaggagaaaaccatactg
aaaatcgtttccgcgagagagcaggaaggagagtttctatccttgaacaatttcattgac
cgtgttgctatttcaatcgagcaattgacgatcctgatccgcatagatgcgttcaggttt
acgggaattaacaagaaaacattactttggaaggcacatttcaggcttagtaaaacaccg
tcaaaagtaccgcagaagcaattattcaagtcggaagtgaaagattatcagctgccgact
ttccattcgtcgcccatcgacgacgcctatgatcagatagaattacttggttttgcgctt
tgcagtccttttgatttattaaaaaacgctttgccaaaaagtgtcatgagcaaagatctg
catgtttatgtaaatcgggaggttgtgcagtatggttatctggtggcggtcaaaaacaca
cgcacggcaagaggcgaaacaatgcaattcgggacttttctggatcaggaaggacaattt
attgacaccgtacatttcccgcaagttgctgttaaattcaatttttctgtgaaaggcgtt
tataaaatccgcggtgttgtgacggaagaatttggttttctgacaattgaagtaatggag
atcacgaggatggattccgcaacacgttga
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