Dyadobacter fanqingshengii: NFI81_19235
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Entry
NFI81_19235 CDS
T08895
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dfq
Dyadobacter fanqingshengii
Pathway
dfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFI81_19235 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfq03019
]
NFI81_19235 (recQ)
03400 DNA repair and recombination proteins [BR:
dfq03400
]
NFI81_19235 (recQ)
Enzymes [BR:
dfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NFI81_19235 (recQ)
Messenger RNA biogenesis [BR:
dfq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NFI81_19235 (recQ)
DNA repair and recombination proteins [BR:
dfq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NFI81_19235 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
HEM4
HTH_11
Motif
Other DBs
NCBI-ProteinID:
USJ34833
LinkDB
All DBs
Position
4618276..4620426
Genome browser
AA seq
716 aa
AA seq
DB search
MQDNKLEALKKYFGYDSFRPQQAEIIDTVMAGNDCLVLMPTGGGKSVCFQIPAILKDGLT
VVISPLIALMKDQVEALRGNGVNAAFLNSSLSGSEQDSVMWQAKIGELKLLYIAPERLFS
GNTFEFLREWNVKLFAVDESHCISSWGHDFRPEYRSLNTLKLRFPDVPVIALTATADRVT
RRDILKQLNIESAQTFIASFDRPNLNLSVLPGRKRMQQIQEFLKKHEGQAGIIYCLSRKG
TETVAASLKNAGFKAEYYHAGLAPDKRSRVQEQFLKDDIQVIVATIAFGMGIDKSNVRWV
IHYNLPSNVESFYQEIGRAGRDGSASDTVLFYSFLDIITRQDMINNSDQSAEQKELLHAK
LNRMKQYAEADICRRRILLSYFNEAVDYDCGNCDVCRNPRTRFDATVIAQKALSGIARTD
QKVAMGMLIDILRGSRNRNILQHGYDRLPTFGVGNELRGEEWAEYIGQLLNSGVMDIAYD
EAHSFKLNPVSKQVLKGERKVELVKFIPISERKAKEEELVPKEKPKQEIIRDALFERLRI
LRKQMADALGVPPYVVFSDATLSEMAQKKPISEAQMKAVSGIGAEKFRRYGETFINEILA
FARENTKPGTRVVKGMTYVETLDLYKEGYSLKIIAEKRDLSTVTIISHLIKLKEDGHDID
LRGLIDNQAYNTITQAASEIQVGKNDPLKPLFELLNEQFDYGQIRLALALFEESRN
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacaacaaactagaagcactaaaaaaatattttggttacgactccttccgaccg
cagcaagccgaaatcattgacaccgtaatggcaggcaatgactgcctggtcctcatgccc
acgggcggtggaaaatccgtttgctttcaaattcccgccatactcaaagacggcctgaca
gtcgtcatttcaccattgatcgcattgatgaaggatcaggtggaagcgttgcgtggtaat
ggtgtcaatgctgcttttctaaattcttcactatccggctccgagcaggatagtgtcatg
tggcaagccaaaatcggcgaacttaaattgctatacattgctcccgagcggcttttttcg
ggaaatacatttgaattcctgcgcgaatggaatgtgaaattatttgctgtggatgaatcg
cattgtatttcttcctggggccacgatttccgtccggaatatcgatcgctgaatacattg
aaattgcgtttcccggacgttcccgtgattgcattaaccgccaccgccgaccgggtgaca
aggcgggatatcctgaaacagctgaacattgaatccgcacaaacattcattgccagcttc
gaccgacctaacctgaacctgagcgtgcttccgggcagaaagcggatgcagcagattcag
gaatttttgaaaaaacacgaaggacaagcaggcatcatttactgtctgagccggaaagga
accgaaaccgtggcggccagcctgaaaaacgctggcttcaaagcggaatattatcatgca
ggtttggcaccggataagcgttcgcgcgttcaggagcagtttctcaaagatgatattcag
gtgattgtggccacgattgccttcggaatggggattgacaaatccaatgtgcgctgggtc
attcattacaatctgccttcgaatgtggagagcttttaccaggaaatcggacgggcgggt
cgtgacggttctgcttcggatacagtccttttttacagtttcctggacatcattaccagg
caggatatgatcaataattcggatcagtcggctgagcagaaggagcttttgcacgccaaa
ctgaaccggatgaagcaatatgcggaagcggatatttgccggcgacgcattttgctgagc
tattttaatgaagccgtagattatgactgcggcaattgcgacgtgtgccgaaatccaaga
actcgattcgacgccaccgtcatcgcccaaaaagcactttccgggatcgcgagaaccgat
cagaaagtggcgatggggatgctgattgatattttaagaggtagccgcaatcgcaacatt
ctgcaacacggctatgacaggcttcccactttcggtgtgggtaacgagcttcgcggagaa
gaatgggccgaatatatcggccagctgctcaactccggcgtcatggacattgcctacgac
gaagcacattcatttaagttgaatccggttagcaagcaggttttgaagggtgagcgaaaa
gtcgagctggtgaaattcattccaatatccgagcggaaggccaaagaagaagaacttgtt
ccaaaggaaaaaccaaaacaggagatcatccgcgatgcattgtttgaaaggctgcgcatt
ttgagaaaacaaatggccgacgcgctgggcgtgccgccgtatgtggtttttagtgacgcg
actctttcggaaatggctcagaaaaaacctatttccgaggcgcagatgaaggctgtttca
gggattggtgcggagaaattccgccgttatggagaaactttcatcaatgaaattcttgcc
tttgccagagaaaataccaaacccggaacccgtgtggtaaaaggcatgacttacgtggaa
acactggatttgtacaaagaaggttactctttaaaaataattgcagaaaaacgtgatctt
agcacagtcactattatttcacatttgatcaagctaaaagaagatggccacgacattgac
cttcgcggactcattgataatcaagcttataatacaataacgcaggcggcatcagaaatt
caggtaggcaagaatgatccgctcaaaccacttttcgagctccttaatgagcaatttgac
tacggccagatccggctcgcacttgcacttttcgaggaatcacgaaattaa
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