Dyadobacter fanqingshengii: NFI81_20060
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Entry
NFI81_20060 CDS
T08895
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dfq
Dyadobacter fanqingshengii
Pathway
dfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFI81_20060 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfq03019
]
NFI81_20060 (rnr)
03016 Transfer RNA biogenesis [BR:
dfq03016
]
NFI81_20060 (rnr)
Enzymes [BR:
dfq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NFI81_20060 (rnr)
Messenger RNA biogenesis [BR:
dfq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NFI81_20060 (rnr)
Transfer RNA biogenesis [BR:
dfq03016
]
Prokaryotic type
tRNA degradation factors
NFI81_20060 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
S1CSD-TOTE-2
Rrp44_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
USJ34983
LinkDB
All DBs
Position
complement(4805987..4808359)
Genome browser
AA seq
790 aa
AA seq
DB search
MKDKKIKINKGNDKKEVRTPHHIVSYIDNLKADIAAFFDLNSEHTFRPFDVHDHFGVEDK
KVKQLINEIIHELEEAGRLVHQNGGYSAGPNKEVKKGLTGRVDRVNKSFAFVIIEGREDD
IYIESEMLNGAWDGDIVTVQPLTKSSRNSRSGRNDSGKSRVEGRVAEIVERSGTEIVGII
EITSRYAVVQPDNKKLFDPIYIEKEEVKEAQDGDKVIVKVLQWPTRRSQAEGEIIQVLGK
AGNNDVEMHAILAEFGLPYHFPETVEAEAQRIPDKISEKDIKKRKDIRDVLTFTIDPVDA
KDFDDALSVRYLDEGVVEVGVHIADVSHYVLPGTELEKEAYRRATSVYLVDRTVPMLPEK
LSNNLCSLRPNEDKLSFSAIFELSPKGKVLKEWFGRTIIHSDRRFSYEEAQAVLDSGEGD
HPRELHTLNTLAKILRKERFKNGAINFETPEVRFRLDENGKPLGIYQKERHDSNKLIEEF
MLLANKRVAEYVYSLSKGENKNTMIYRVHEAPDTDRLQTFANFVGKLGYKLEVEEENKIA
KSMNSMLSKVEGKPEQNLIESLAVRTMAKARYSVEDLGHFGLAFERYSHFTSPIRRYPDV
MAHRLLQHYLDGGASVPRDSYEDASKHSSERERLAAEAERASIKYKQVEYMSMMDKDQEF
DGIVTGVTEFGIFVEITETASEGLIRMTDLGDDYYELDKENYRIIGQRTKKIYTFGEKVK
VKVKDTNLARRSMDLYLAGTIPSPMRNNNGSGGDRDKRQRESRESRSSGRSRKTTSSASS
PKPKSKRRGR
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacaagaaaataaaaattaacaaaggcaatgataaaaaagaggttagaacgcct
caccatattgtttcctacattgacaatctaaaagctgacattgcggcttttttcgattta
aacagtgagcacactttccgccctttcgatgtccatgatcactttggtgttgaggataag
aaggttaagcagcttattaatgaaattattcatgagctggaagaggcgggaaggcttgtg
catcaaaatggcggctattctgccggtccgaataaagaggtaaaaaaagggcttaccggg
cgcgtggaccgcgtgaacaaatcattcgcattcgtaatcattgaaggccgcgaagacgac
atctacatagaatccgaaatgttgaatggcgcctgggacggtgacattgttactgttcag
ccgctgacaaaaagcagccgtaattcgagatccggtcgcaatgattcgggcaagagccgt
gtagaagggcgcgttgcagaaattgtggagcgctcggggacggagattgtcgggatcatt
gaaattacgtcgcgttatgcagttgtccagccggacaacaaaaagctttttgacccgatt
tatattgaaaaagaggaggttaaggaagcgcaggacggtgataaggttattgtaaaagtc
ttgcagtggccaacaaggagaagtcaggcagaaggcgaaattattcaggttttaggaaaa
gccggaaataatgacgtcgaaatgcacgctattctcgcggaattcgggcttccttaccat
ttccccgaaactgttgaagccgaggcgcagcgcattccggataaaatctcagaaaaggac
attaagaagcgcaaagacattcgtgatgtcctgacgtttacaattgacccggttgatgcc
aaagactttgacgacgcgctttccgtgcgttacctggatgaaggcgtggttgaggttggc
gttcacattgcggacgtttcgcattatgttttgccaggaactgagctggaaaaagaggct
tatcgccgtgctacatcggtttatctggtagaccggacggttccaatgcttcctgaaaag
ctttccaataacctatgttcgctcagacctaatgaagataaactttcgttttcagccatt
tttgaattaagtccaaaaggcaaagtgctgaaagaatggtttggcaggacgatcatacac
tcggacaggcggttttcatatgaagaagcgcaggctgttctggattccggagaaggagat
catccgcgtgagctgcatacattgaacacgttggcgaagattttacgcaaagaacggttc
aaaaatggcgcgatcaatttcgaaacgccggaagttcgtttccgactggatgagaatgga
aaaccgcttgggatttatcaaaaagagcgtcacgattccaacaaattgattgaggaattc
atgctgcttgccaataaacgcgttgcggaatacgtgtattcgctttcaaaaggcgaaaat
aaaaatacaatgatttaccgcgtccacgaagcgcctgatacggatcgcctgcagacattt
gcgaactttgttggcaaactaggctataaactggaagtggaagaggaaaataaaattgcc
aaatccatgaacagcatgctttccaaagtcgaaggcaagccggagcaaaacctgatcgag
tcactggctgtaaggacgatggcaaaggcgcgttacagcgttgaggatctgggccacttt
gggttggcatttgagcgttattcgcattttacatcgcccattcgccgttacccggacgtt
atggcgcacaggcttttgcaacattatctggacggcggcgcctcggttcccagggacagt
tacgaagatgcgtccaagcattcatctgaaagggaacgactcgctgccgaggccgaaagg
gcctcgattaaatacaagcaggtggagtacatgagtatgatggacaaagaccaagaattt
gacggcattgttacaggcgttactgagtttgggatttttgttgaaattaccgaaaccgca
tcagaaggactgatccgtatgacggatctgggcgacgattactacgagcttgataaggaa
aattaccgaatcatcggccagcgcaccaagaagatttacacttttggagaaaaggttaag
gtgaaggtaaaagacacaaaccttgccagaagaagtatggacctatatttggcagggact
atcccttcgccgatgcggaataataatggttctggtggcgatagggacaagcgccaaaga
gaatcgcgtgaatcgcgatcgtcaggcaggagtcggaaaacgacttcttcggcttcttct
cctaaaccgaaaagtaaaagaagaggcagataa
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