Dermatophagoides farinae (American house dust mite): 124490389
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Entry
124490389 CDS
T08043
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124490389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfr03019
]
124490389
03041 Spliceosome [BR:
dfr03041
]
124490389
03009 Ribosome biogenesis [BR:
dfr03009
]
124490389
03016 Transfer RNA biogenesis [BR:
dfr03016
]
124490389
Enzymes [BR:
dfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124490389
Messenger RNA biogenesis [BR:
dfr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124490389
Spliceosome [BR:
dfr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124490389
Complex C
U4/U6.U5 tri-SnRNP related factors
124490389
Ribosome biogenesis [BR:
dfr03009
]
Eukaryotic type
Pre-60S particles
Helicases
124490389
Transfer RNA biogenesis [BR:
dfr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124490389
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
124490389
NCBI-ProteinID:
XP_046908826
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MDLFDVFDLDPKSNDNNNKRKANVIEESNGKNSGNDNGEKELMTIDEDVDNGLIDKLIND
VKRKKGNDDNLLITSMVDELTKTHDDKDDDDDENLGQDYGTFTARVAIHEIETQGSCVHE
VIIPDDLEYVPLRDQSENPNYKPAKSYKFTLDSFQKEAILCIENNQSVLVSAHTSAGKTV
VAEYAIASSFQNKQRVIYTTPIKALSNQKYREFQEEFEDVGLITGDVTINPNATCLIMTT
EILRLMLFRGSEIMREVGWVIFDEIHYMRDRERGVIWEETIILLPDTVHYVFLSATIPNA
RQFAEWIAHLHHQSCHVVYTDFRPTPLQHYIYPAGGDGLHLVLDEQNNFREDNFNLAMNV
LQNSSVENSSSKGGDQSCITVIRTIMERNLAPVILFSFSRKECEVYALQISNLKLDFNSA
EEKALVEEVFNNAIDVLGDDDKKLPQVQQILPLLKRGVGIHHSGLLPLIKETIEILFGEG
LIKALFATETFAMGLNMPARTVVFTSVRKFDGTNFRFLTSGEYIQMSGRAGRRGLDERGI
VILRVDEKVNPAVGKEMICGKPDPLNSAFHLTYNMVLNLLRVEEVNPEYMLEHSFFQFQQ
YLEYPKLHEKYKKLKEQSNIEIENEECIGDYVKTKNQITELTKEFLVFITTPRYILPFLN
SGRLLKIVNNDNIDMDWGVLINYNKPPPMDRKRNDKQELTYQIDVLLPVDKTIDPISETI
LPPSSVEKCEMKIISLRLSNITNISAARAFVPQDLRSYDSRQSVLKSIKEIKKRFSGNIP
LLDPLVDMKIKDNDFLNIVKRIELCEKKLREYKQINQESVKQYERKMDIVHKMKQTKEMM
KKTRSLLQMDELKCRKRVLRRLGYCTSADVIEIKGRVACEITSGDELLLTEMLFHGLFND
LNVYQIAALLSCMVFEEKTDVRPKLGEELSKPLKTMQELAKKIATVSKETKLEIDEKVYI
EKFRPNLMDVIYSWTKGKSFSEICKMTDAFEGSIIRCMRRLEELLRQMCQASKVIGNTDL
ENKFSEAIKLIKRDIVFAASLYL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggatttattcgatgtttttgatttggatccaaaatccaatgataataataataaacga
aaagccaatgttattgaagaaagtaatggcaaaaatagtggtaatgataatggtgaaaaa
gaattgatgaccatcgacgaagatgttgacaacggtttgatcgataaattaatcaacgat
gtgaaacgtaaaaaaggtaatgatgataatcttctaatcacttcaatggtagatgaattg
accaaaacacatgatgataaagatgatgatgatgatgaaaatttgggtcaagattatgga
acttttactgctcgtgtcgcaattcatgaaatagaaacacaaggatcgtgtgtacatgaa
gtgatcatacctgacgatttggaatatgtgcctcttcgagatcaaagtgaaaatcctaat
tataaaccggctaaatcatataaattcacattggattcatttcaaaaagaagcaatcctt
tgtattgaaaataatcaaagcgttttggtttcggcacacacttccgctggtaaaacggtt
gttgctgaatatgccattgcatcttcattccaaaacaaacaacgtgttatctacacaaca
ccaatcaaagcattgagtaatcaaaaatatcgtgaatttcaagaagaatttgaagacgtt
ggattaatcactggcgatgtgacaatcaatccgaatgccacttgtttgattatgactaca
gaaattcttcgtttaatgttatttcgtggcagtgaaattatgcgtgaagttggatgggta
attttcgatgaaattcattatatgcgtgaccgtgaacgtggtgttatctgggaagagacc
attattcttttgcccgacactgtgcattatgttttcctatccgctactataccgaatgca
agacaatttgccgaatggatagctcatctacatcatcaaagttgtcatgttgtctataca
gattttcgtccaacacctttacaacattatatctatccagctggtggtgatggacttcat
ttggtattggatgaacaaaataattttcgtgaagataatttcaatctagctatgaatgta
ttgcaaaattcttctgttgaaaattcatcatccaaaggtggtgatcaaagttgtatcaca
gttatccgtacaatcatggaacgaaatctggcaccagttattctatttagttttagccgt
aaagaatgtgaagtttatgcacttcaaattagcaatcttaaattggatttcaattctgcc
gaagaaaaagcattagtcgaagaagtatttaataatgcaatcgatgtacttggtgatgat
gataaaaaattaccacaagtacagcaaatattaccacttcttaaacgtggtgttggcatc
catcacagtggtcttttaccattgatcaaagaaacgattgaaattttattcggtgaaggt
cttataaaagcattgtttgccaccgaaacttttgccatgggtttgaatatgccggctaga
acggttgtgttcacaagtgtacgaaaatttgatggtacaaattttcgatttctaacttca
ggcgaatacattcaaatgagtggccgtgctggccgtcgtggccttgatgaacgtggcata
gttatacttcgtgtggatgaaaaagttaatccagctgttggtaaagaaatgatttgtggt
aaacctgatccactgaactcagcgtttcatttgacatataatatggttttgaatctgtta
cgtgttgaagaagtgaatcctgaatacatgcttgagcatagttttttccaatttcaacaa
tatcttgaatatcctaagctgcatgaaaaatacaaaaaactaaaagaacaaagtaacatc
gaaatcgaaaatgaagaatgtattggtgattatgttaaaacaaaaaatcagattactgaa
ttgaccaaagaatttctggttttcatcacaacaccaagatatattttaccatttttaaat
agtggacgtttattgaaaatcgttaacaatgataacatcgatatggattggggtgtattg
attaattataataaaccaccaccaatggatagaaaacgaaatgataaacaagaattgaca
tatcaaatcgatgttctgctaccagtggataaaacaattgatccaattagtgaaacaata
ttgccaccaagtagtgtggaaaaatgtgaaatgaaaattatatcattacgattatcgaac
atcacaaatatcagtgcagcacgtgcatttgtaccacaagatttacgtagttatgatagc
cgccaatcggttttgaaatctataaaagaaattaaaaaacgtttcagtggaaacattcct
ttgttggatccattggtggatatgaaaatcaaagataatgattttctcaacattgtcaaa
cgaattgaattgtgtgaaaaaaaactacgtgaatataaacaaatcaaccaagaaagtgtt
aaacaatatgaacgaaaaatggatattgtacataaaatgaaacaaaccaaagaaatgatg
aaaaaaactagaagtttattacagatggatgaattgaaatgccgcaaacgtgtactgcgt
cgtttaggctattgtacatcggcagatgtcatcgagattaaaggacgtgttgcctgtgaa
attactagtggcgatgaattattattgaccgaaatgttattccatggattattcaatgat
ttaaatgtatatcagattgccgcattattaagctgtatggttttcgaagaaaaaacagat
gttcgacctaaattgggtgaagaattatcgaaaccattgaaaacaatgcaagaattggct
aaaaaaattgcaaccgtttcaaaggaaaccaaattagaaatcgatgaaaaagtttacata
gaaaaatttcgaccaaatctaatggatgttatttattcatggacaaaaggaaagtcattt
tcagaaatatgtaaaatgaccgatgcattcgaaggttcaataatacgttgtatgcgacgt
ttggaagaattattaagacaaatgtgtcaggcatcaaaagtgattggcaatactgatttg
gagaataaattctctgaagcaatcaaattaataaaacgtgatattgtttttgcagccagc
ttatatctttaa
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