Dermatophagoides farinae (American house dust mite): 124490714
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Entry
124490714 CDS
T08043
Symbol
Prp16
Name
(RefSeq) ATP-dependent RNA helicase l(1)G0007
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124490714 (Prp16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dfr03041
]
124490714 (Prp16)
Enzymes [BR:
dfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124490714 (Prp16)
Spliceosome [BR:
dfr03041
]
Complex C
Other components
Step II factors
124490714 (Prp16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
SRP54
nSTAND_NTPase5
T2SSE
AAA_30
ResIII
Sigma54_activ_2
AAA_7
AAA_16
ATPase
PhoH
AAA_23
NB-ARC
AAA_14
Cas3-like_C_2
ABC_tran
cobW
Motif
Other DBs
NCBI-GeneID:
124490714
NCBI-ProteinID:
XP_046909218
LinkDB
All DBs
Position
4:complement(2832718..2836484)
Genome browser
AA seq
1152 aa
AA seq
DB search
MSFDTTNIHRLEGTKSNEPGGLYIPNKKSLKNPGAENLTYQKPQTSLLGLDTLAAKKREE
RERSRERDDDKHSEKFRHSASHDRYYRSKRIETPTVSDGVSDEYRERKKARDERHRDKYE
NEFTSKHFKRPQQQPNIPSSKSWKSFDHSSPRRLTTPSRSAWDEDDDSGYNGSSSRQDWE
RPSSSRRHSSSTSRVPSTPRFTPSHWTDRRDPSRSIRGGGDNESMEKSWEEDEEEIRRLD
RVWYDDECDQNPFGDMPDEYTKEKEESLKKSKVVQRVSAQQRQINKDNEKWETNRLLLSG
VVTKINDNNNDDENIEGRVHLMVHNIVPPFLDGRIVFTKQPEPVVPVKDPTSDFAILARK
GSALVRYHREMKERKKAQKKEWELSGTRLGDIMGVEKPKDEMDDNAKCGGDYKTEHRFKD
HIDDEDRMDRTKIMKQRQFLPAFAVRNELLQVIRDNNIVIIVGETGSGKTTQLTQYLHEE
GYTKYGVIGCTQPRRVAAMSVAKRVADEVGVKLGEEVGYAIRFEDCTSNKTIIKYMTDGI
LLRESLSEPDLDNYAAVIMDEAHERSLDTDVLFGILRQVAARRNDIKLIITSATMDATKF
AMFFGNVPVFTIPGRTYPVELYFSKSPVEDYVDAAVKQTIQIHLGGLEGDILVFMPGQED
IEVTCEVIKERLKTLSETSTTEIPELAILPIYSQLPSDLQAKIFRKADQGIRKVVVATNI
AETSLTVDGIMFVVDSGYCKLKVYNPRIGMDALQIYPVSQANANQRSGRAGRTGPGCCYR
LYTERQYKHEMLTNTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPQDNMMNSMYQL
WILGALDNVGQLTPLGRNMVEFPLDPAMSKMLLVSTEMHCSAEVLIIVSMLSVPSIFYRP
KGREEESDLVREKFQVPESDHLTLLNSYLQWRMHKYSSHWCQQHFIHPKAMRKVREVRQQ
LKEIMESHKLPIISCGNEWDCIRKCICSAYFHQAARLKGIGEYVNMRTGMPCHLHPTSAL
YGMGFTPDYVIYHELIMTTKEYMQCVTAVEGQWLAELGPMFYSVKESSKSRLERKQQQRD
HEKEMEQEMAIAEEMLRRNKEEMDSRSYLSLSRSTMIVTPGLKRPMTPAATDSGTVCNQT
PKRSTPGQRFGL
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgacacaacaaatattcatcgtttagaaggtaccaaatctaatgaacctgga
ggtctatatatcccgaataaaaaatcgttgaaaaatcctggagccgaaaatttaacatat
caaaaaccacaaacatcattactcggtttagatacattagcggcgaaaaaacgtgaagaa
cgtgaacgatcacgtgaaagagatgatgataaacatagtgaaaaatttcgccattcagcc
tcacatgatcgttattatcgttcgaaacgaatcgaaacaccaaccgtatcggatggtgtg
tctgatgaatatcgagaacgtaaaaaagctcgagatgaacgacatcgagataaatatgag
aatgaatttacaagtaaacatttcaaacgtccacaacaacaaccgaatattccgtcatca
aaatcatggaaatcatttgaccattcatcaccacgacgtttaacaacaccatctcgatct
gcctgggatgaagatgatgacagtggttataatggtagtagttcccgacaggattgggaa
cgaccatcatcatcaagacgacattcatcatcaacatcaagagttccatctacaccacga
tttacaccatcacattggactgatcgacgagatccatcgcgaagtatacgtggtggtggt
gataatgaatcgatggaaaaatcttgggaagaagatgaagaagaaattcgacgtttagat
cgtgtctggtatgatgatgaatgtgatcaaaatccattcggggatatgcccgatgaatat
acaaaagagaaagaagaatccttgaaaaaatctaaagtcgtgcaacgagtttcggcacaa
caacggcagattaataaagataatgaaaaatgggaaacaaatcgtttattattatctggt
gttgtaacaaaaatcaacgataataataatgatgatgaaaatattgaaggtcgtgttcat
cttatggtacataatattgttccaccatttttagatggtcgaattgtttttactaaacaa
ccggaaccagttgtaccggttaaagatccaacatcggattttgctattcttgcacgaaaa
ggttcggcattggttcgttatcatcgtgaaatgaaggaaagaaaaaaagcacagaaaaaa
gaatgggaattatccggtacacgtcttggtgatataatgggtgttgaaaaaccgaaagat
gaaatggatgataatgcaaaatgtggtggtgattataaaaccgaacatcgatttaaagat
catatcgacgatgaagatcggatggatcgcacgaaaattatgaaacaacgacaattttta
ccagcattcgctgtccgtaatgaattattacaggtgatacgtgataataatattgttatt
attgttggcgaaactggttccggtaaaactacacaattaacacaatatttacatgaagaa
ggatataccaaatatggtgtgattggttgtacacaaccaagacgtgtagcagctatgtcg
gttgcaaaacgtgttgctgatgaagtgggagtaaaattgggtgaagaagttggctatgct
atacgatttgaagattgtacatcgaataaaacaattattaaatatatgaccgatggtata
ctattgagagaatcattatccgaaccagatctggataattatgctgccgttattatggat
gaagctcatgaaagaagtttagatacggatgtattgtttggcattctacgacaagtagcc
gcacgtcgtaatgatattaaattgattattacttcggccactatggatgcaacaaaattt
gccatgttttttggtaatgttccagtattcactattccgggtcgtacctatccagtagaa
ttatatttctctaaaagtcctgttgaagattatgttgatgcagccgttaaacaaacgatt
caaattcatcttggtggtcttgaaggtgatattcttgtatttatgcccggacaagaagat
attgaagttacgtgtgaagtaataaaagaacgtttaaaaacattatcagaaacatcgacg
actgaaataccggaattagcaattctaccgatttattcacaattaccttcagatttacag
gcgaaaatttttcgtaaagccgatcaaggtatacgtaaagttgttgtagcaacaaatatt
gccgaaacatcattaaccgttgatggtattatgtttgttgtcgatagtggttattgtaaa
ttaaaagtatataatccaagaatcggtatggatgcattacaaatatatcccgtatcacaa
gcgaatgccaatcaacgtagtggtcgtgctggtcgtactggacctgggtgttgttatcgt
ttatatactgaacgacaatataaacatgaaatgcttacaaatactgtaccggaaattcaa
cgaacaaatctagccaatgttgttctattactgaaatcattaggtgtacaagatttgtta
caatttcattttatggatccaccaccgcaggataatatgatgaattcaatgtatcagcta
tggatacttggtgcattggataatgttggacaattaacaccacttggaagaaatatggtt
gaatttcctttggatccggcaatgtcaaaaatgttattagtttctaccgaaatgcactgt
tcagctgaagtattgattattgtatcaatgttatcggttccatcgattttttatcgccca
aaaggtcgtgaagaagaaagtgatttagttagagaaaaatttcaagtacctgaatctgat
catttaactctattgaattcctatctacaatggcgtatgcataaatattcgagccattgg
tgtcaacaacattttatccatccgaaagcgatgcgtaaagttcgtgaagtacgacaacaa
ttaaaagagataatggaatcacataaattgccaatcatttcctgtggaaatgaatgggat
tgtatacgaaaatgtatttgttccgcttattttcatcaggctgctcgtctaaaaggtatt
ggtgaatatgtaaatatgcgtacaggtatgccatgtcatctacatccaacatcagcatta
tatggtatgggttttacacccgattatgttatctatcatgaattgattatgacaacaaaa
gaatatatgcaatgtgtaacagctgttgaaggacagtggcttgccgaattaggaccaatg
ttttattcggtaaaagaatcctcgaaatcacgtttggaacgtaaacaacagcaacgtgat
catgaaaaagaaatggaacaagagatggccatagctgaagaaatgttacggcgtaataaa
gaagaaatggatagccgttcttatctgtcattgtcacgatcaacaatgattgtaacaccg
ggtttaaaacgaccaatgacaccagctgccaccgattctggtactgtttgtaatcaaaca
ccaaaacgttcgacaccaggtcaaagatttggtttataa
DBGET
integrated database retrieval system
