Dermatophagoides farinae (American house dust mite): 124491159
Help
Entry
124491159 CDS
T08043
Symbol
Upf2
Name
(RefSeq) UPF2 regulator of nonsense mediated mRNA decay
KO
K14327
regulator of nonsense transcripts 2
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03013
Nucleocytoplasmic transport
dfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124491159 (Upf2)
03015 mRNA surveillance pathway
124491159 (Upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfr03019
]
124491159 (Upf2)
Messenger RNA biogenesis [BR:
dfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124491159 (Upf2)
mRNA cycle factors
P-body specific factors
124491159 (Upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
124491159
NCBI-ProteinID:
XP_046909741
LinkDB
All DBs
Position
4:complement(5340310..5345780)
Genome browser
AA seq
1371 aa
AA seq
DB search
MVVTTMQKSEENEADNSATNQEKQEETVNHGEENKNNDKDDNNKSEENDKEQQQQEEQSI
QEYIKELSERYKEKREKRYEHNVSNIEYPDEDLFVKLDTSIKKNTAFVKKIRNMTESNKD
VIMKDLENLNLSRFISELATALVETKIKANEIGMFIQICSFLHLRYCDFAAHLFDAWNKN
LPRKPSDQFNASKMRVDIKIFTELILSGIFTTKDSLPALGNLLTILTNADKETHKNISIL
VAFCRGYGVEFAGLYPRRQRMLAEKFQLQLPVCDFLSVERQRGVQTLLKDYYHSLIQHIS
KDRKYLFHLKNDMKRSLETRGEVSEALQEKWKTKSVEFEKLYQTATTFADLIDEEMPDID
TQALENDTMLMKNENVTAVLFDLNRFKENNPSIWDDEETRIFYEKLPDLKSLVPAMLYKD
SLKDESTMATNNNEASGKENGESNDGNLPPASSSTEIETDQNLDLSKEDDLILTGDDTSI
PDPKDVPLLNENDDVDPDSSTMKYDKNKIRIVKFNFNATKDQLDTYFSSLPNCVNCDLID
KAALHFATTFNTKNNRKKLVDVLIRVPRTRLDLLPFYGRFVAQLAPIMPSVSTELCIGLK
NQFRYNFYKKDQVYIESKVKIVRFIGELVKFNLFSKTEALKILKTLLSDFHHHHIEMTCN
LFEVCGRYLYRCPESHHMTNLLLQQMMRLKNHMYVNTRYETMIQNAYYSVTPEDKSAARN
IQTKPVMHQYIEHLVYTELSRKTVSNVLKKLRRIDWNDKEINAFAIQSLASAWKVKCDNI
PALASLLSNLSQHRSQTVLMVMDTVLENIRIGKQMNSLEYNQRRISTIKFFAECFNYNLV
DSTLLFNVMYSLLIYGVDYNDAGKSPMDPPFNLMRLRLVAQILHICGHFLMSPAAKKKLD
FFLFFFQRYYWLKKSYINSLPVEQIDQMALFYIDAIFADVLQFLRPKFKKAQSYQQSCEL
LEKRLKELAENVKDVLPNSNVSIKNVLTPSTNSSNMQPPINDGQLEPIKEDSENEIDENG
GDKKKNDEKNLLKKDSNNNDGNNNVNCNPLNNDGDINSDNNSGSKGCVDGDYDNSDEEEI
EDRSIGNIYNDGDGSPRPIMQKPVEQKDDYDDDNNNADMINTDPDDSDGDLDSNEDIDDE
EEDDEDDDDGDDSDENQNNKSNDGRGGGLRIHPCEEDDLFQRDFERLMMENLTSRSQEVT
QRMNVEIVIPIERDSDTNKARQLGSGYESSLFSLEPSTMSNNNKNQQSQETETKSFNFRV
MTKNQKSNKPILRSIEVPADSDLVQNFLAREQAQKREKEQVKKLILGFNERREMEDQSPN
TSNSSVGSIGNNVRSITDYQHNRSTGGGYYHHQHHYRGGGGGGVNYRRRFQ
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgacaacgatgcaaaaaagtgaagaaaatgaagccgataattcggcaacgaat
caagaaaaacaagaagaaacagttaatcatggcgaagaaaacaaaaataatgataaagat
gataataataaaagcgaagaaaacgataaagaacaacaacaacaagaagaacaatcgatc
caagaatatatcaaagaattgtctgaaagatataaagagaaacgtgaaaaacgttatgaa
cacaatgtatcaaatattgaatatccggatgaagatttattcgtcaagttagatacttcg
atcaaaaagaatacggcattcgtgaagaaaattcgtaatatgactgaatcgaataaagat
gtcattatgaaagatttagaaaatcttaatctatctcgtttcatttctgaattggctacg
gcattagtggaaacgaaaattaaagccaatgaaatcggaatgttcatacagatttgttca
tttcttcatcttcgttattgtgactttgctgctcatttattcgatgcttggaataaaaat
cttccacggaaaccttctgatcagtttaatgcatcgaaaatgcgagtcgacataaaaatc
tttaccgaattaattctatccggcattttcacgaccaaagattcattaccagcgttggga
aatttacttacaattttaacgaatgccgataaagaaacacataaaaatataagcattttg
gtggcattctgtcgtggttatggtgtagaatttgccggcctttatccacgccgtcaacga
atgttggccgaaaaattccaattacaattacctgtttgcgattttctttcagtggaacga
caacgaggtgttcaaacattactcaaagattattatcattcattaatacaacacatatcc
aaagatcgtaaataccttttccatttgaaaaacgatatgaaacgtagccttgaaacacgt
ggtgaagtatctgaagcattacaagaaaaatggaaaaccaaatcggttgaatttgaaaaa
ttgtatcaaacagctacaacatttgccgatctgatcgatgaagaaatgcccgatatcgac
acacaggcattggaaaatgatactatgttgatgaaaaatgaaaatgtaactgccgttttg
tttgatctaaatcgtttcaaagaaaataatccatccatatgggatgatgaagaaacacga
atattctatgaaaaacttcctgatttaaaatcattagtaccggccatgctttataaagat
agtcttaaagatgaatcgacaatggctacgaataataatgaagcttctggtaaagaaaat
ggtgaatcaaacgatggaaatctaccaccagcaagtagttcgactgaaattgaaaccgat
caaaatcttgacctatccaaagaagatgatctaatattaacaggtgatgatacatctata
ccagatcccaaagatgtaccattattgaatgaaaatgatgatgtcgatccagattcatct
acaatgaaatatgataaaaacaaaatccgtattgtaaaatttaatttcaatgcaaccaaa
gatcagctggatacatatttctctagtcttcctaattgtgttaattgtgatctgatcgat
aaagccgccctacattttgcaacgacattcaatacgaaaaataatcgaaaaaaattggtc
gatgtattgattcgagtgccacgaacccgtttggatttattaccattctatggacggttt
gttgctcaattagcaccaatcatgccaagtgtttccaccgaactttgtattggccttaaa
aatcaattccgttataatttttacaaaaaagatcaagtatacattgaaagtaaggtgaaa
attgtaagattcatcggtgaattggtcaaattcaatttgttttctaaaacggaagcgctc
aaaattcttaagactctattatcggattttcatcatcatcacattgaaatgacttgtaat
ttatttgaagtttgtggccgttatctatatcgttgccctgaatcacatcatatgaccaat
ttattattacaacaaatgatgcgtctgaagaatcacatgtatgttaacactcgatatgaa
acaatgatacagaatgcatattattcggttacacctgaagataaatcggctgctcgtaac
atacaaacaaaacctgtaatgcatcaatacattgaacatttggtttatacagaattatca
cgaaaaactgtatcgaatgtattgaaaaaacttcgacgtatcgattggaatgataaagaa
atcaatgcatttgccattcaatctttggcatcagcatggaaagttaaatgtgataatatt
ccagcattggctagcctattatccaatctttcgcaacatcgatcacaaacagtgttgatg
gtaatggacactgtattggaaaatattcgtattgggaagcaaatgaattcattagaatat
aatcaacgtcgtatatcgaccataaaattttttgccgaatgtttcaactataatcttgtt
gattcaacgttattgttcaatgtaatgtattccttgttgatatatggcgttgattataat
gatgctggaaaaagtcctatggatccaccattcaatttaatgcgtcttcgtttggtcgct
caaatattacatatttgtggccattttttaatgtcaccagctgctaagaaaaaattggat
ttttttctattctttttccaacgttattattggctaaaaaaatcgtatataaattcatta
cctgttgaacaaatcgatcagatggctttgttctatattgatgcaatatttgctgatgtt
ttacaatttttacgaccaaaatttaaaaaagctcaatcatatcaacaatcttgtgaacta
ttggaaaaacgtctgaaagagttggctgaaaatgttaaagatgtattacctaattcaaac
gtatcaattaagaatgtattaacaccatcaactaattcatcaaacatgcaaccacccatc
aatgatgggcaactcgaaccaatcaaagaggattctgaaaatgaaatcgatgaaaatggt
ggcgacaaaaagaaaaatgatgaaaaaaatttactaaaaaaagatagtaataataatgac
ggcaataataatgtcaattgtaatcccctcaataatgatggcgatattaatagtgataat
aattccggtagtaaaggctgcgtcgatggtgattatgacaatagtgatgaagaagaaatt
gaagatcgtagtattggtaatatctataatgatggtgatggttcaccccgaccaattatg
caaaaaccagtcgaacaaaaagatgattatgatgatgataataataatgcggatatgatt
aataccgatcctgatgatagtgatggtgatttagatagtaatgaagatattgatgatgag
gaagaggatgatgaggatgacgatgatggtgatgatagtgatgaaaatcaaaataacaaa
tcgaatgatggtagaggaggtggtctacgaatacatccatgtgaagaggatgatttattt
caacgtgattttgaacgtttaatgatggaaaatctcacctcacgttcacaagaggtaaca
caacgtatgaatgttgaaattgtcataccaatcgaacgtgattcagatacaaataaagcc
cgacaattgggtagtggctatgaatcatcattattttcattggaaccatcgactatgtca
aacaataacaaaaatcaacaatcacaggaaacagaaacgaaaagtttcaatttccgtgtg
atgactaaaaatcaaaaatctaataaaccaatattacgatcgattgaagtaccggccgat
tcggatctagtacagaatttccttgctcgtgaacaagcacagaaacgtgaaaaagaacag
gtgaaaaaattgattcttggcttcaatgaacggcgagaaatggaagatcaaagtccaaat
acttcaaattccagtgttggctctatcggtaataatgttagatcgataactgattatcaa
cacaatagatctactggtggtggttattatcatcatcaacatcattatcgcggcggcggt
ggtggtggtgttaattatcgcagacgttttcaataa
DBGET
integrated database retrieval system
