Dermatophagoides farinae (American house dust mite): 124492694
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Entry
124492694 CDS
T08043
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfr03016
]
124492694
Enzymes [BR:
dfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
124492694
Transfer RNA biogenesis [BR:
dfr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124492694
Prokaryotic type
tRNA splicing ligases
124492694
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
124492694
NCBI-ProteinID:
XP_046911621
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MARTYEEELEYLVRNNSNSWTIKKGFVPGMKVEGIFYVNDHLEKLMFEELRTSCSAGGFG
GFLPGVKQIANVAALPGIIGKSIGLPDIHSGYGFAIGNMAAFDMNDPEAIVSPGGVGFDI
NCGVRFLRTNLFEKDVQPVKEELAQSLFDHIPVGVGSKGIIPMNAKDLEEALEMGVDWSM
REGYAWAEDKEHCEEYGRMLNADPSKVSMKAKKRGLPQLGTLGAGNHYAEIQVVDEIFDK
YNAEKMGIESIGQICVMIHSGSRGFGHQVATDALLEMEKAMKRDNIKVNDRQLACARINS
VEGQNYLKAMAAAANFAWVNRSSMTFLTRQAFAKTFHSTPDDLDMHLIYDVSHNIAKVEQ
HLVDDKPKTLLVHRKGSTRAFPPHHPLIPVDYQITGQPVLIGGTMGTCSYVLTGTETGMQ
ETFGTTCHGAGRALSRAKSRRNLDYQDVLNDLAAKGISIRVASPKLVMEEAPESYKNVTD
VVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaacatatgaagaagaattggaatatttggttcgaaataattccaatagctgg
actataaaaaaaggatttgtacctggtatgaaggtggaaggaattttctatgtcaatgat
catttggagaaacttatgtttgaagaattacgaacatcatgtagtgctggaggttttggt
ggttttttacccggcgttaaacaaattgccaatgttgctgcattgcctggtatcataggg
aaatcgattggtttgcccgatattcattctggatatggttttgccataggtaatatggct
gcattcgatatgaatgatcctgaagcaatcgtttctccgggtggtgttggtttcgatatc
aattgtggtgtacggtttttacgaaccaatttattcgagaaagatgtccaacctgttaaa
gaagaattggcacaatcattatttgatcatattcctgtgggtgtcgggtcaaaaggtatt
attccaatgaatgctaaagatttagaagaagctttagaaatgggtgtcgattggtcaatg
cgcgaaggttatgcatgggccgaagataaagaacattgtgaagaatatggtcgtatgcta
aatgctgatccaagtaaagtatcgatgaaggcgaaaaaacgtggattaccacaacttggt
acattaggtgccggtaatcattatgctgaaattcaagtggtggacgaaatttttgataaa
tataatgccgaaaaaatgggcattgaatccattggacaaatttgtgttatgattcacagt
ggtagccgtggttttggacatcaagttgcaaccgatgctctattggagatggaaaaagca
atgaaacgagataacatcaaagtgaacgatcgacaattggcatgtgcacgaatcaattct
gtcgaaggtcaaaattatctaaaagcaatggcggcggctgccaattttgcttgggtcaat
cgtagctcaatgacatttttgacacgtcaagctttcgcgaaaacttttcattcaacaccc
gatgatttagatatgcatctcatctatgatgtttcacataatattgctaaagtggaacaa
cacttggtggatgataaacccaaaacattacttgttcatcgtaaaggatcgacaagagct
tttccaccacatcatccattgattcctgtggattatcagatcactggacaacctgttcta
attggtggtacaatgggaacatgtagctatgtattaacggggacggaaactggaatgcaa
gaaacattcggcactacatgtcacggtgctggtcgtgccttgtcacgtgcaaaatcaaga
agaaatcttgattatcaagatgtcctgaatgatttagctgcaaaaggtatatcgattcgt
gtagcatcaccaaaattagtaatggaagaagcaccagaatcttataaaaatgtaactgat
gttgtcgatacttgtcatgctgccggcatcagtaaaaaatgtatcaaattacgcccaatt
gctgttattaaaggctaa
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