Dermatophagoides farinae (American house dust mite): 124492821
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Entry
124492821 CDS
T08043
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03020
RNA polymerase
dfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124492821
09124 Replication and repair
03420 Nucleotide excision repair
124492821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfr03021
]
124492821
03400 DNA repair and recombination proteins [BR:
dfr03400
]
124492821
Enzymes [BR:
dfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124492821
Transcription machinery [BR:
dfr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124492821
DNA repair and recombination proteins [BR:
dfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124492821
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
124492821
NCBI-ProteinID:
XP_046911777
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MYEDEDQIDDEETPEISSELWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED
SSTIEIEAEPQHKSGIIEAPTTYTIKFEQIYLSKATHWEKDGTPTAMMPNEARLRNLTYS
APLYVDIIKTITRENQEPIETMHEKTYIGKIPIMLRSTYCLLNGLTDRDLAELNECPLDP
GGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYTYKAECRSCIEHSSRPTSTLWVNMLA
RGSQGGKKNTVGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMV
KPSLDEAFVIQEQRIALNFIGTRGARPGVPLEKRIKYAKEILQKEMLPHVGVGDFCETKK
AYYLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAYLFRGLFRNLTKEVRSYAQK
FIDRGKDFQLELAIKTRIISDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSH
LRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPI
LEFLEEWSMENLEEIAPSAISEATKIFVNGCWVGIHREPDLLMNTLRKLRRQMDIIVSEV
SMVRDIRDREIRIYTDAGRICRPLLIVQNQKLLLKRCHIEQLKNREYNSFSWHDLVASGV
VEYIDTLEEETVMIAMTPDDLQESENPYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR
NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA
IMSYTGYNQEDSVIMNASAIDRGFFRSIFYRSYKDSEQKRLGDQEDQFEKPTRDTCQGMR
NAIYDKLEDDGIIAPGTRVSGDDVIIGKTTTLPENDDDLSGGVKQYTKRDASTFLRNSET
GIVDQVMITVNNEGYKFCKIRVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGI
TPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTVNVQKISDLLHDYNYH
LRGYEVMYNAHTGRKVNCQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARD
GGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRVHICNLCGLICIANLRTNTFECKGCR
NKTQISQVRIPYAAKLLFQELLSMSIAPRLIVT
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaagatgaggatcaaatcgacgatgaagaaacgccagagattagttcagaatta
tggcaagaagcctgttggattgtcatatcatcatatttcgatgaaaaaggtctcgtacga
caacaacttgattcattcgatgaattcatacaaatgtctgtacaaagaatcgttgaagat
tcatctacaattgaaattgaagccgaaccacaacataaatccggcatcattgaagcacct
acaacttatacgataaaatttgaacaaatctatctgtcaaaagcaacacattgggaaaaa
gatggtacaccgacagcaatgatgccaaatgaagctcgtcttcgtaatcttacctattcg
gctccattgtatgtagatatcatcaagacaataacacgagaaaatcaagaaccaatcgaa
acgatgcatgaaaaaacttatattggtaaaattcctatcatgcttcggtcaacatattgt
ctactcaatggtcttactgatcgtgatttggccgaattgaatgaatgtcctcttgatcct
ggtggttatttcatcattaatggttcggaaaaagttttgattgctcaggaaaaaatggcc
acaaatactgtatatgttttttcgatgaaagattcaaaatatacttataaagccgaatgt
cgatcctgtattgaacattcatcgagaccaaccagtacattatgggtgaatatgttggct
cgtggatcacaaggtggtaaaaaaaatacggttggtcaacgaattattgccatcattccg
tatataaaacaagaaatacccattatgattgtattccgtgcacttggttttgtcgccgat
agagatattctcgaacatataatatacgattttgaagatcctgaaatgatggaaatggtg
aaaccatctttagatgaagcttttgtcattcaagaacaacggatagcactaaattttatt
ggaacacgtggtgcacgtccaggtgtaccactcgaaaaacgtattaaatatgccaaagaa
attctgcaaaaagaaatgttaccacacgttggtgttggtgatttttgtgaaacgaaaaaa
gcctactatcttggctacatggtacatcgattattgttagctgcattaggccgaagagaa
ttggatgatcgtgatcattatggaaacaaacgtttagatttggctggtccattattggct
tatctatttcgtggcctgtttcgtaatctaaccaaagaggttcgaagttatgcacagaaa
ttcattgatcgtggaaaagattttcaattagaattggccatcaaaactagaataatttcc
gatggtttacggtattcattagccactggtaattggggtgatcagaaaaaagcacatcaa
gcacgagccggtgtctcacaagtacttaatcgtcttacttatgcatcaactttatcacat
cttcgtcgtgtaaattcaccgattggtcgtgatggaaaattagctaaaccacgtcaatta
cataacactctgtggggtatgatttgtccggccgagacgcctgaaggacatgctgtcggt
ttggtcaaaaatcttgcacttatggcctacatttctgtcggttctcaaccatcaccaatt
ctagaatttttagaagaatggtcaatggaaaacctagaagaaattgctccatcagccatt
tcggaagcgacaaaaattttcgtcaatggttgttgggtcggtattcatcgtgaaccggat
ttattaatgaatacattacgaaaattacggcgacaaatggatattatcgtttcggaagta
tcgatggtacgcgatatacgtgatcgagaaattcgtatctatacggatgctggccgtata
tgtcgtccattgttgattgttcaaaatcaaaaactattactaaaacgttgtcatattgaa
cagttaaaaaatcgtgaatacaatagttttagttggcatgatttagttgcttcgggcgtt
gtcgaatatattgatacattggaagaggaaactgtaatgattgctatgacaccagatgat
ctacaagaatccgaaaatccatattgttctacgtatactcattgtgaaattcatccatca
atgatacttggtgtttgtgcatcgatcatcccatttcctgatcataatcaatcaccacgt
aatacgtatcaatcagctatgggtaaacaagctatgggtgtttatattaccaattttcat
gttcgtatggatacattggcacatgtactttattatccacaaaaaccattagtaacaaca
cgatcaatggaatatcttcgtttccgtgaattaccagctggtattaattcaattgttgcc
atcatgtcatatacgggttataatcaagaagattcagttatcatgaatgcttcagctatt
gatcgtgggttttttcgttccatcttttatcgttcatataaagattctgaacaaaaacgg
ctcggtgatcaagaagatcaatttgaaaaaccaacacgagatacatgtcaaggaatgcgt
aatgctatctatgataaattagaagatgatggtattattgcaccgggaactcgtgtttct
ggtgacgatgttattattggtaaaacgacaactttaccagaaaatgatgatgatttatcc
ggcggtgttaaacaatacaccaaacgtgatgcaagtacatttttacgaaacagtgaaact
ggtattgtcgatcaggtgatgatcactgtaaataatgagggatataaattctgtaaaatt
cgtgtccgttctgttcgtgtaccacaaattggcgataaatttgcctcaagacatggccag
aaaggtacctgtggtattacttatagacaagaagatatgcctttcacttgtgaaggtatc
acaccagatatcatcattaatccgcatgctataccatctcgtatgactatcggtcatttg
attgaatgtttacaaggtaaagtttctgcgaataaaggagagattggtgatgctacacca
ttcaatgatactgttaatgttcagaaaatttcagaccttttacatgattataactatcat
cttcgtggttacgaagtaatgtacaatgcacatactggtcgtaaagttaattgtcagatt
ttccttggtcctacctattatcaacgattgaaacatatggtcgatgataaaattcattca
cgagctcgaggaccagtacagattcttgttcgacaacctatggaaggtcgtgctcgtgat
ggtggacttcgtttcggtgaaatggaacgtgattgccagattgctcatggtgccgcacaa
tttcttcgtgaacgtttgttcgaagtatccgatccatatcgtgttcatatttgtaatcta
tgcggtttgatttgtatcgctaatcttcgtacgaatacattcgaatgtaaaggctgtcgt
aataagacacagatctcacaggtacgcataccatatgctgctaaactattgtttcaagaa
cttttatcaatgtcaattgcaccacgattgattgtgacatga
DBGET
integrated database retrieval system
