Dermatophagoides farinae (American house dust mite): 124493186
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Entry
124493186 CDS
T08043
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124493186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfr03019
]
124493186
03041 Spliceosome [BR:
dfr03041
]
124493186
Messenger RNA biogenesis [BR:
dfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124493186
Spliceosome [BR:
dfr03041
]
Complex B
Other components
Prp19-related factors
124493186
Complex C
124493186
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_15
TPR_8
Suf
TPR_2
TPR_12
Mad3_BUB1_I
TPR_7
RPN7
ARM_TT21
Methyltrans_RNA
Mad3_BUB1_I_2
Motif
Other DBs
NCBI-GeneID:
124493186
NCBI-ProteinID:
XP_046912221
LinkDB
All DBs
Position
Unknown
AA seq
857 aa
AA seq
DB search
MDNDTEKNSSIVISEEDLAHEEDILRNSYSIKHWLRYIDHKKESSNNVVNLLYERALKLM
PGSYKLWYSYLKLRVKQTSSLSIFDPLVKDSNNCFERSLVFMHKMPRIWIEYLQFLISQC
DLTKTRRTFDRALQALPITQHNRIWPLYLKFVKSHNLPETSIRVYRRYLMLSPEEAEDFI
DYLISIERWDEAALKLTEIVNDEHFVSKQGRSKHQLWTELAEILCRHPGEIHSLNVDVII
REGIKRYVDQQGKLWISLAEYYTRSGLFDKARDIFEEALANIKTVRDFSQIFDAYTQSEE
KLIQIRMNQENLSEDDEIELDLRMIRYEDIIERRPLLLNNVALRQNPHNVEEWLKRVKLL
ENKPAEIVEVYSDAVQTVQAKQAIGKYYLLWVKFAQFYESNGQLEDARLIFEKAVTVEYV
KVEDLANVWCEWVEMEVRNNNFETALKLMQRAVSIPTRKTSYYDQSESVQNRLYKSLKIW
SMYADLEESFGTFESTKAVYDKIIELKIVTPQIIINYGLFLEENGYFEESFKAYEKGIAL
FRWPNVFDIWNTYLTKFLRRYKGSKLERIRDLFEQCLEYCPATYCKHFFFLYAKCEEEYG
LARNATTIYDRATKKVPSSERMEVFNIFIRKAAEMFGVTHTRSIYEKAIEMLPDAEAREM
CLKFADLERKLGEIDRARAIYAHCSQICDPRTATTFWNAWKDFEIKHGNEDTVREMLRIK
RSVMATFNTQVNFMSAQMMASAFHQQDKEQNNKMNDLENIAAEANQQTKQEIKNAVQFVK
SDSATNNGNKMNETIIITDTANPDEINLDDDEDLDAEQSDGDEDENGQSSKTKLTEIEQK
MVPKEVFGGLRNDDDDD
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggataatgatacggagaaaaattcatctattgttatcagcgaagaagatctggctcac
gaagaagatattctccgaaattcttattcaatcaaacattggttgcgttatattgatcat
aagaaagaatcatcaaacaatgttgtcaatttattatatgaaagagctttgaaattaatg
cctggtagttataaactatggtatagttatcttaagcttcgcgttaaacagacaagttcg
ttatcaatatttgatccactcgtaaaggattcgaataattgttttgaacgttcattggtt
tttatgcataaaatgccacgaatatggatcgaatatctacaatttttaatttcacaatgt
gatttgaccaaaacacggcgaacatttgatcgtgcattacaagcgttaccaatcactcaa
cataatcgtatatggccattatatttaaaattcgttaaatcacataatcttcccgaaacc
tcgattcgtgtttatcgtcgttatctaatgttatcgccagaagaagctgaagattttatc
gattatctgatctcgatagaacgatgggatgaagctgcattgaaattgacagaaattgta
aatgatgaacatttcgtttctaaacaaggtcgatctaaacatcaactatggacagaatta
gccgaaattctatgccgtcatccgggtgaaattcattcactcaatgttgatgtaattatt
cgtgaaggcataaaacgatatgttgatcaacaaggaaaactatggattagtttagccgaa
tattatactcgtagcggtttatttgataaagcacgtgatatattcgaagaagcattggcc
aacattaaaactgttcgtgatttttcacaaattttcgatgcttacacacaaagtgaagag
aaattgattcagatccgtatgaatcaagagaatctaagtgaagatgatgaaattgaattg
gatttacgaatgatacgatatgaagatatcatcgaacgacgaccattattattgaacaat
gttgcattgcgacaaaatccacataatgttgaagaatggttgaaaagagttaaactgttg
gaaaataaaccagccgagattgttgaagtttatagtgatgctgtacaaactgtacaggca
aaacaagcaatcggcaagtattatttattgtgggtaaaatttgcccaattctatgaatct
aatggccagcttgaagatgcaagattaattttcgaaaaagccgtcacagttgaatacgta
aaagttgaagatctggccaatgtttggtgtgaatgggtagaaatggaagtgcgtaataac
aatttcgaaacggcattaaaattaatgcaaagagccgtttctattccaactagaaaaaca
tcatattatgatcaatccgaatcggtacagaaccgtttatataaatcattgaaaatatgg
tcaatgtatgccgacttggaggaaagttttggaacatttgaatcaacaaaagcagtgtat
gataaaataattgaattgaaaatcgtcacaccgcaaataatcataaattatggccttttc
ctcgaggaaaacggatactttgaagaatcattcaaagcatatgagaaaggtatcgcattg
tttcgatggccaaatgttttcgacatttggaatacatatctaacgaaatttctacgacga
tataaaggttccaaattggaacgtatacgagatctatttgaacaatgtctagaatattgt
ccggcaacatattgtaagcatttctttttcctttatgctaaatgtgaagaagaatatggt
ttggctagaaatgcaaccactatttatgatcgagcaacgaaaaaagtaccatcatccgaa
cgaatggaagtattcaatatttttattcgtaaagcagccgaaatgtttggcgttacacat
acgagatcaatctatgagaaagcaatcgaaatgttgccagatgctgaagcacgtgaaatg
tgtttgaaatttgccgatctcgaacgaaaattgggtgaaattgaccgtgcacgtgccata
tatgcacattgtagccagatatgtgatccacgtacggccactacattctggaatgcgtgg
aaagattttgagataaaacatggaaatgaagatacggtacgagaaatgcttcgaataaaa
cgttcagtgatggccacattcaatacacaagttaatttcatgtccgcacaaatgatggct
tcagctttccatcaacaggataaagaacagaataacaaaatgaatgatttggaaaacatc
gctgcagaagctaatcaacagacaaaacaagagattaaaaatgccgtacaatttgtcaaa
tcagattcagcaacgaataatggtaataaaatgaatgaaaccatcatcattaccgataca
gccaatccagatgaaataaatctggatgacgatgaagatttggatgcggaacaaagcgat
ggtgatgaagacgaaaatggacaatcatctaaaactaaattgactgaaattgaacaaaaa
atggttccaaaagaagtttttggaggtttacgaaacgacgacgatgatgattga
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