Dermatophagoides farinae (American house dust mite): 124493480
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Entry
124493480 CDS
T08043
Symbol
Sym
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin scaffold protein
KO
K06100
symplekin
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124493480 (Sym)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfr03021
]
124493480 (Sym)
03019 Messenger RNA biogenesis [BR:
dfr03019
]
124493480 (Sym)
Transcription machinery [BR:
dfr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124493480 (Sym)
Messenger RNA biogenesis [BR:
dfr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124493480 (Sym)
U7-dependent histone pre-mRNA processing factors
124493480 (Sym)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_GCN1
DASH_Dad4
Motif
Other DBs
NCBI-GeneID:
124493480
NCBI-ProteinID:
XP_046912513
LinkDB
All DBs
Position
6:1640723..1644430
Genome browser
AA seq
1129 aa
AA seq
DB search
MSSNSEADRIESRVIEFLENAIASTNESEKVSFLNQAQELVIHNDILDNFLDEILGFQND
KLSEVRKFVASFIEATCRKDPDFFPKVIVNLSLMLADEVPNVLKRVIQALTQLYKIFLPW
ISAAKVNEEIESTGEVWNQIKNQVFSLIDLTENDGVRTQCVKFIEMVIVCQTRRDNFSKE
EDFSLDQIVNVDKKLIDIETLEDEAKQLFEQLINFQSKIHISSVNLMATMQSLSLIARQR
SRLXFDKVVLAFETLSTNLPPTLAKSQVNSVNKQLKLLMFMLFKHPYIQFSKYQSKIMQT
LQNIGVKQSEINRCIQESKKRGIKIEANNSNNNVGHEPKRIKIEMDEDDDEMENNNGNNN
QVQENEQPKFNLDTSLHDLSRKFSRYDAIKAADITAKDLIGRLNNSNTVCDLVLTSLHLL
PDNLKPESIASLNDFSFSLNDPAAIAKKMAFFLTGMAIGPGIDEVIAKYMNLFETQYRMK
IDNETNKKITSMVKKLISREMKNQQQNHNKVKLVQSGKKMTSAVKIKQLKLEDITKPLEL
NEKIRHMEKCISRILVSNQSAQFSAKQYENYRKIIGKFSSNLVAFDPLKTLIKDYIFQDI
RSRYDILFNALYLEYIHCKSHEKSMKSYSDYLAWIIESVFDTCETNDLDFFLQKLYLESP
LLDDRAIEMFKNFVLHSEDFESSSTILRILVEKRPSYRQEFLTCLLQICIETENADIHQS
SLAMIIEIYQNPKFNLKETAESFALECLNRLKNDTYGPNVLGAKEPMPWNDDAIKAVLAV
YLKLLPLNQKLIHELPNVYVATNAHIKRVILRLIQEPIQDIDMNSMEMIKFVQNGFIDGA
EILVSRVIHILTDKRKPSAKLVACVKDLYQKQKRVTDVRFLIPVLSGFTKREIIEILPQL
IKLNPNVIKEVFNRMFVSHDPSYQSPISPADLMIALHNIDPSKCDLRTIIKAIHLCFEEK
SLFTAEVFAIVMQMLSEQNPLPTLLMRTVIQTLGHYPRLISFVMNNILQRLILKQVWNQK
KVWEGFIKCCQRTLPQSFPVLLQLPPIQLQSVFQTCPEIRPSLINYLQQMNQQQVSLIPQ
SLLDVILSSEYDMNTNQMINSDGGHHRSQQRQQQQQSITESITDNVDSS
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgaattcggaagccgatcgtatcgaatctcgagtgattgaatttctggaaaat
gctatcgcttcaaccaatgaaagtgaaaaagtatcattcctaaatcaggctcaagaactg
gtcattcataatgatattttggataattttctcgatgaaattcttggatttcaaaatgat
aaattatctgaagtacgtaaatttgttgccagttttatcgaagcaacatgtagaaaggat
ccggattttttcccaaaagttattgtcaatttaagccttatgttagccgatgaagttccc
aatgttttgaaacgtgtaattcaagctttaactcaattgtataaaatatttttgccatgg
atttcggcggcaaaagtgaatgaagaaattgaatcaactggtgaagtttggaaccagatt
aaaaatcaggttttctcattgatcgatttaaccgaaaacgatggtgttcgtacccaatgt
gttaaatttatcgaaatggttatcgtatgtcaaactcgaagggataatttctctaaagaa
gaagatttctctctggatcaaatcgttaacgtggataaaaaattaatcgacattgaaaca
ttggaagacgaagcaaaacaattgtttgaacaattgattaattttcaatcgaaaattcat
atttctagtgtaaatttaatggctacaatgcaaagtttatcgttgattgcaagacaacgt
tcacgtttttttgacaaagttgttttggcattcgaaactttaagtacaaatttaccacca
acattggccaaatcacaagttaattctgtcaacaaacaattaaaacttttaatgttcatg
ttatttaaacatccttatattcaattctcgaaatatcaatcgaaaataatgcaaacattg
caaaatattggcgtcaaacaaagcgaaataaatcgttgtatacaggaaagtaaaaaacgt
ggtatcaaaatcgaagccaacaacagcaataataatgttggtcatgaaccgaaacgaatc
aaaattgaaatggatgaagatgatgatgaaatggaaaacaataatggtaataataatcaa
gtacaagaaaatgaacaaccaaaattcaatctggatactagtctacatgatttgtcaaga
aaattttctcgatatgatgctattaaagctgccgatataacggccaaagatctaattggt
cgtctaaataattcgaatactgtctgtgatttagttcttacatcattacatttattacca
gataatttaaagccggaatcaattgcttcattaaatgatttttcattctcattgaatgat
ccggcagctattgcaaaaaaaatggcattttttctcaccggaatggctatcggaccagga
atcgatgaagtgatagctaaatatatgaatctatttgaaactcaatatcgaatgaaaatt
gacaatgaaacaaataaaaaaataacaagtatggtaaaaaaattaataagtcgtgagatg
aaaaatcaacaacaaaatcataataaagttaaacttgtacaatcgggaaagaaaatgaca
tcagccgtaaagattaaacaacttaaattggaagatataactaaaccattggaattgaat
gaaaaaattcgtcatatggaaaaatgtatttcacgtatattggtgtccaatcaatcggca
caattttcagctaaacaatatgaaaattatcgtaaaataattggaaaattttcatcaaat
ctagttgcatttgatccattgaaaacattgataaaggattatatttttcaggatattcgt
tcccgttatgatatattattcaatgctttatatctagaatatattcattgtaaatcacat
gaaaaatcaatgaaatcatattccgattatcttgcatggatcattgaaagtgtattcgat
acttgtgaaacgaatgatttggatttttttcttcaaaaactgtatctagaatcaccatta
cttgatgatagagctattgaaatgtttaagaattttgtacttcattcagaagattttgaa
tcatcatcaaccatattacgaatattggttgagaaaagaccatcgtataggcaagaattt
ctcacctgtttattacagatttgtattgaaacagaaaatgctgatattcatcaatcatca
ttggcgatgattattgagatttatcagaatcctaaatttaatctaaaagaaactgctgaa
tcatttgcattagaatgtttgaatcgattgaaaaatgatacatatggtccgaatgtactt
ggagcaaaggaaccgatgccctggaatgatgatgccatcaaagctgtacttgctgtttat
ctaaaattattaccacttaatcaaaaattgattcatgaattaccaaatgtttatgtggca
acaaatgcccatataaaacgtgttattttacgattaattcaagaaccaattcaagatatt
gatatgaattcaatggaaatgattaaattcgtacagaatggttttattgatggtgccgaa
attcttgtatcacgtgtaatacacatattgaccgataaacgaaaaccaagtgctaaattg
gttgcctgtgttaaagatttatatcaaaaacaaaaacgtgttaccgatgttcgttttcta
ataccagtgctaagtggttttaccaaacgagaaattattgaaatcttaccacaactaatc
aaattgaatccaaatgttataaaagaagtgttcaacagaatgttcgtttcacatgatcca
tcatatcaaagtccaatttcacctgccgatctcatgattgcattgcacaatattgatcca
tccaaatgtgatttgaggacaattataaaagccatacatttatgtttcgaagagaaatca
ttgtttacagctgaagtttttgccattgtcatgcaaatgcttagtgaacaaaatccttta
ccaacattattgatgcgtacagtgatacaaacattgggccattatccaaggttaatcagt
tttgttatgaacaatattcttcaacgtttaatattgaaacaagtttggaatcagaaaaaa
gtatgggaaggttttatcaaatgttgtcaacgaacattaccacaaagttttcctgtatta
ttacaattaccaccaatacaattacaatctgtatttcaaacatgtccagaaattcgtcca
tcattgattaattatctacaacagatgaatcaacaacaggtttcattaataccacaatca
ttattggatgtaatattatcatctgaatatgatatgaatacaaatcaaatgatcaattct
gatggtggccatcatagatcacaacaacggcagcagcagcagcaatcaatcactgaatca
ataactgataatgttgattcatcataa
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