Dermatophagoides farinae (American house dust mite): 124493480
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Entry
124493480 CDS
T08043
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin-like
KO
K06100
symplekin
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124493480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfr03021
]
124493480
03019 Messenger RNA biogenesis [BR:
dfr03019
]
124493480
Transcription machinery [BR:
dfr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124493480
Messenger RNA biogenesis [BR:
dfr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124493480
U7-dependent histone pre-mRNA processing factors
124493480
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_GCN1
DASH_Dad4
Motif
Other DBs
NCBI-GeneID:
124493480
NCBI-ProteinID:
XP_046912513
LinkDB
All DBs
Position
Unknown
AA seq
1128 aa
AA seq
DB search
MSSNSEADRIESRVIEFLENAIASTNESEKVSFLNQAQELVIHNDILDNFLDEILGFQND
KLSEVRKFVASFIEATCRKDPDFFPKVIVNLSLMLADEVPNVLKRVIQALTQLYKIFLPW
ISTAKVNEEIESTGEVWNQIKNQVFSLIDLTENDGVRTQCVKFIEMVIVCQTRRDNFSKE
EDFSLDQIVNVDKKLIDIETLEDEAKQLFEQLINFQSKIHISSVNLMATMQSLSLIARQR
SRLFFDKVVLAFETLSTNLPPTLAKSQVNSVNKQLKLLMFMLFKHPYIQFSKYQSKIMQT
LQNIGVKQSEINRCIQESKKRGIKIEANNSNNNVGHEPKRIKIEMDEDDDEMENNNGNNN
QVQENEQPKFNLDTSLHDLSRKFSRYDAIKAADITAKDLIGRLNNSNTVCDLVLTSLHLL
PDNLKPESIASLNDFSFSLNDPAAIKKMAFFLTGMAIGPGIDEVIAKYMNLFETQYRMKI
DNETNKKITSMVKKLISREMKNQQQNHNKVKLVQSGKKMTSAVKIKQLKLEDITKPLELN
EKIRHMEKCISRILVSNQSAQFSAKQYENYRKIIGKFSSNLVAFDPLKTLIKDYIFQDIR
SRYDILFNALYLEYIHCKSHEKSMKSYSDYLAWIIESVFDTCETNDLDFFLQKLYLESPL
LDDRAIEMFKNFVLHSEDFESSSTILRILVEKRPSYRQEFLTCLLQICIETENADIHQSS
LAMIIEIYQNPKFNLKETAESFALECLNRLKNDTYGPNVLGAKEPMPWNDDAIKAVLAVY
LKLLPLNQKLIHELPNVYVATNAHIKRVILRLIQEPIQDIDMNSMEMIKFVQNGFIDGAE
ILVSRVIHILTDKRKPSAKLVACVKDLYQKQKRVTDVRFLIPVLSGFTKREIIEILPQLI
KLNPNVIKEVFNRMFVSHDPSYQSPISPADLMIALHNIDPSKCDLRTIIKAIHLCFEEKS
LFTAEVFAIVMQMLSEQNPLPTLLMRTVIQTLGHYPRLISFVMNNILQRLILKQVWNQKK
VWEGFIKCCQRTLPQSFPVLLQLPPIQLQSVFQTCPEIRPSLINYLQQMNQQQVSLIPQS
LLDVILSSEYDMNTNQMINSDGGHHRSQQRQQQQQSITESITDNVDSS
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgaattcggaagccgatcgtatcgaatctcgagtgattgaatttctggaaaat
gctatcgcttcaaccaatgaaagtgaaaaagtatcattcctaaatcaggctcaagaactg
gtcattcataatgatattttggataattttctcgatgaaattcttggatttcaaaatgat
aaattatctgaagtacgtaaatttgttgccagttttatcgaagcaacatgtagaaaggat
ccggattttttcccaaaagttattgtcaatttaagccttatgttagccgatgaagttccc
aatgttttgaaacgtgtaattcaagctttaactcaattgtataaaatatttttgccatgg
atttcgacggcaaaagtgaatgaagaaattgaatcaactggtgaagtttggaaccagatt
aaaaatcaggttttctcattgatcgatttaaccgaaaacgatggtgttcgtacccaatgt
gttaaatttatcgaaatggttatcgtatgtcaaactcgaagagataatttctctaaagaa
gaagatttctctctggatcaaatcgttaacgtggataaaaaattaatcgacattgaaaca
ttggaagacgaagcaaaacaattgtttgaacaattgattaattttcaatcgaaaattcat
atttctagtgtaaatttaatggctacaatgcaaagtttatcgttgattgcaagacaacgt
tcacgtttgtttttcgacaaagttgttttggcattcgaaactttaagtacaaatttacca
ccaacattggccaaatcacaagttaattctgtcaacaaacaattaaaacttttaatgttc
atgttatttaaacatccttatattcaattctcgaaatatcaatcgaaaataatgcaaaca
ttgcaaaatattggcgtcaaacaaagcgaaataaatcgttgtatacaggaaagtaaaaaa
cgtggtatcaaaatcgaagccaacaacagcaataataatgttggtcatgaaccgaaacga
atcaaaattgaaatggatgaagatgatgatgaaatggaaaacaataatggtaataataat
caagtacaagaaaatgaacaaccaaaattcaatctggatactagtctacatgatttatca
agaaaattttctcgatatgatgctattaaagctgccgatataacggccaaagatctaatt
ggtcgtctaaataattcgaatactgtctgtgatttagttcttacatcattacatttatta
ccagataatttaaagccggaatcaattgcttcattaaatgatttttcattctcattgaat
gatccggcagctattaaaaaaatggcattttttctcaccggaatggctatcggaccagga
atcgatgaagtgatagctaaatatatgaatctatttgaaactcaatatcgaatgaaaatt
gacaatgaaacaaataaaaaaataacaagtatggtaaaaaaattaataagtcgtgagatg
aaaaatcaacaacaaaatcataataaagttaaacttgtacaatcgggaaagaaaatgaca
tcagccgtaaagattaaacaacttaaattggaagatataactaaaccattggaattgaat
gaaaaaattcgtcatatggaaaaatgtatttcacgtatattggtgtcgaatcaatcggca
caattttcagctaaacaatatgaaaattatcgtaaaataattggaaaattttcatcaaat
ctagttgcatttgatccattgaaaacattgataaaggattatatttttcaggatattcgt
tcccgttatgatatattattcaatgctttatatctagaatatattcattgtaaatcacat
gaaaaatcaatgaaatcatattccgattatcttgcatggatcattgaaagtgtattcgat
acttgtgaaacgaatgatttggatttttttcttcaaaaactatatctagaatcaccatta
cttgatgatagagctattgaaatgtttaagaattttgtacttcattcagaagattttgaa
tcatcatcaaccatattacgaatattggttgagaaaagaccatcgtataggcaagaattt
ctcacctgtttattacagatttgtattgaaacagaaaatgctgatattcatcaatcatca
ttggcgatgattattgagatttatcagaatcctaaatttaatctaaaagaaactgctgaa
tcatttgcattagaatgtttgaatcgattgaaaaatgatacatatggtccgaatgtactt
ggagcaaaggaaccgatgccctggaatgatgatgccatcaaagctgtacttgctgtttat
ctaaaattattaccacttaatcaaaaattgattcatgaattaccaaatgtttatgtggca
acaaatgcccatataaaacgtgttattttacgattaattcaagaaccaattcaagatatt
gatatgaattcaatggaaatgattaaattcgtacagaatggttttattgatggtgccgaa
attcttgtatcacgtgtaatacacatattgaccgataaacgaaaaccaagtgctaaattg
gttgcctgtgttaaagatttatatcaaaaacaaaaacgtgttaccgatgttcgttttcta
ataccagtgctaagtggttttaccaaacgagaaattattgaaatcttaccacaactaatc
aaattgaatccaaatgttataaaagaagtgttcaacagaatgttcgtttcacatgatcca
tcatatcaaagtccaatttcacctgccgatctcatgattgcattgcacaatattgatcca
tccaaatgtgatttgaggacaattataaaagccatacatttatgtttcgaagagaaatca
ttgtttacagctgaagtttttgccattgtcatgcaaatgcttagtgaacaaaatccttta
ccaacattattgatgcgtacagtgatacaaacattgggccattatccaaggttaatcagt
tttgttatgaacaatattcttcaacgtttaatattgaaacaagtttggaatcagaaaaaa
gtatgggaaggttttatcaaatgttgtcaacgaacattaccacaaagttttcctgtatta
ttacaattaccaccaatacaattacaatctgtatttcaaacatgtccagaaattcgtcca
tcattgattaattatctacaacagatgaatcaacaacaggtttcattaataccacaatca
ttattggatgtaatattatcatctgaatatgatatgaatacaaatcaaatgatcaattct
gatggtggccatcatagatcacaacaacggcagcagcagcagcaatcaatcactgaatca
ataactgataatgttgattcatcataa
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