Dermatophagoides farinae (American house dust mite): 124494854
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Entry
124494854 CDS
T08043
Name
(RefSeq) LOW QUALITY PROTEIN: exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124494854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfr03019
]
124494854
03041 Spliceosome [BR:
dfr03041
]
124494854
03009 Ribosome biogenesis [BR:
dfr03009
]
124494854
03016 Transfer RNA biogenesis [BR:
dfr03016
]
124494854
Enzymes [BR:
dfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124494854
Messenger RNA biogenesis [BR:
dfr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124494854
Spliceosome [BR:
dfr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124494854
Complex C
U4/U6.U5 tri-SnRNP related factors
124494854
Ribosome biogenesis [BR:
dfr03009
]
Eukaryotic type
Pre-60S particles
Helicases
124494854
Transfer RNA biogenesis [BR:
dfr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124494854
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4-like_stalk
ATPase_2
nSTAND3
OB_DEPS-1_1st
DUF7952
Motif
Other DBs
NCBI-GeneID:
124494854
NCBI-ProteinID:
XP_075585550
LinkDB
All DBs
Position
3:6743381..6747428
Genome browser
AA seq
666 aa
AA seq
DB search
MDLFDVFDLDQKSNDIEKSNDNGEKKLMTTDEDVDNGLIDKSIKDVKRNKDNDENLLITS
MIDEWTITPDDTDDHDDENLGQYYANFTARVAIHKLETQGSCVHEVVIHDDLEYVPLRDH
SGNPIYMPAKSYKFPLDSFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLXKRKR
VIYTTPIKALSNQKYREFKDEFEDVGLITGDVTINQNATCLIMTTEILRLMLFRRKEIIR
QVGWVIFDEIHYMRDRERGVIWEETIILLPDTVHYVFLSATIPNARQFAEWIAYLHHQSC
HIVYTDFRPTPLKHYIYPAGGGGDELYLVLDEQNNFSEENFNTAMNVLKNSSSKVVDPSC
IKIIPIIMKRNLAPVILFCFSRKQCERYALEISILNLDYNSAEEKTLVEEVFNNATDKLS
DEDKKLPQVQQILPLLKRGVGIHHSGLLPLIKEMIEILFGKSLIKVLFATETIGMGLNMP
ARTVVFTSVRKFDGRNSRFLTSSEYIQMSGRAGRRGFDERGIVICQIDKKNSPILVEQMI
CGKPETLNSAFHLTYNMVLNLSRVEQVNPEYILKHSFFQFQQYLEYPKLSEELSKPLKTM
QEFAKKIATVSKETKLEIDEKVYIEKFRPNLMDVIYSWTKGKSFSEISKMTDAFEGSIIR
CMRQIS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatttattcgatgtttttgatttggatcaaaaatccaatgatattgaaaaaagtaat
gataatggtgaaaaaaaattgatgaccaccgacgaagatgttgacaacggtttgatcgac
aaatcaatcaaagatgtgaaacgtaacaaagataatgatgaaaatcttctaatcacttca
atgatagatgaatggaccataacacctgatgatacagatgatcatgatgatgaaaatttg
ggtcagtattatgcaaattttactgctcgtgtcgcaattcataaactggaaacacaagga
tcgtgtgtacatgaagtggtcattcatgacgatttggaatatgtgcctcttcgagatcat
agtggaaatcctatttatatgcctgctaaatcatataaattcccattggattcatttcaa
aaagaagcaatcctttgtattgaaaataatcaaagcgttttggtttcggcacatacttcg
gctggtaaaacggttgttgccgaatatgccattgcatcttcattgtgaaaacgaaaacgt
gttatctacacaacaccaatcaaagcattgagtaatcaaaaatatcgcgaatttaaagat
gaatttgaagatgtaggattaatcactggcgatgtgacaatcaatcagaatgccacttgt
ttgattatgaccacagaaattctacgtttaatgttatttcgtaggaaggaaattatacgt
caagtcggatgggttattttcgatgaaattcattatatgcgtgaccgagaacgtggtgtt
atctgggaagagaccatcattcttcttcccgacactgtccattatgttttcctatccgct
actataccgaatgcaagacaatttgccgaatggatagcttatctacatcatcaaagttgt
catattgtctatacagattttcgtccaacaccattaaaacattatatctatccagctggt
ggtggtggtgatgaactttatttggtattggatgaacaaaataattttagtgaagaaaat
ttcaatacagccatgaatgtgttgaaaaattcatcatccaaagttgttgatccgagttgt
atcaaaattatccctataatcatgaaacgaaatctggcaccagttattctattttgtttt
agccgtaaacaatgcgaacgttatgcacttgaaattagcattcttaatctggattataat
tcagccgaagaaaaaacattagtcgaagaagtattcaacaatgcaaccgataaacttagt
gatgaagataaaaaattaccacaagtacagcaaatattaccacttcttaaacgtggtgtt
ggcatccatcacagtggtcttttgccattgatcaaagaaatgattgaaattttattcggt
aaaagtcttattaaggtattgtttgccactgaaacaattggcatgggtttgaatatgcct
gctcgaacggttgtattcactagtgtacgaaaatttgatggtagaaattcgcgatttcta
acttcaagtgaatacattcagatgagtggccgtgctggtcgtcgtggtttcgatgaacgt
ggtatagttatatgccaaattgataaaaaaaatagtccaattctggttgaacaaatgatt
tgtggtaaaccggaaacattgaattcagcattccatttaacatacaatatggttttaaac
ctatcgcgtgttgaacaagtgaatccagaatacattctcaaacatagtttttttcaattt
caacaatatctggaatatcctaaattgagcgaagaattatctaaaccattgaaaacgatg
caagaatttgcgaaaaaaattgcaaccgtctcaaaggaaacaaaattagaaatcgatgaa
aaagtttatatagaaaaatttcgaccaaatcttatggatgttatttattcatggacaaaa
ggaaaatcattttcagaaatatctaaaatgaccgatgcattcgaagggtcaataatacgt
tgtatgcgacaaatatcttag
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