Dermatophagoides farinae (American house dust mite): 124494857
Help
Entry
124494857 CDS
T08043
Symbol
Col4a1
Name
(RefSeq) collagen type IV alpha 1 isoform X1
KO
K06237
collagen type IV alpha
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr04382
Cornified envelope formation
dfr04512
ECM-receptor interaction
dfr04518
Integrin signaling
dfr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124494857 (Col4a1)
04518 Integrin signaling
124494857 (Col4a1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124494857 (Col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124494857 (Col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dfr04147
]
124494857 (Col4a1)
00536 Glycosaminoglycan binding proteins [BR:
dfr00536
]
124494857 (Col4a1)
Exosome [BR:
dfr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124494857 (Col4a1)
Glycosaminoglycan binding proteins [BR:
dfr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124494857 (Col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124494857
NCBI-ProteinID:
XP_075585620
LinkDB
All DBs
Position
3:6826865..6875078
Genome browser
AA seq
1822 aa
AA seq
DB search
MKSVHIQLHPSLLFMDDSSQKKIFHYKIYDNFSLSYLLWTILAILTIIITRPVHCINDDT
IISRDIQFTGYPSYGWDPSRTLNTICAERRCEPSLPGCRCDPTSTDPMIICCCCNQYRNN
TQQRLCSQRVCVFGDCNCIGEKGSRGPPGMPGPVGPVGLTGHPGMEGAPGERGPKGSRGP
EGPRGPKGDRGKMGMAGFPGIPGLPGVPGAQGPRGYAGLDGCNGTDGKPGLPGRQGHSGP
KGETGPIGPKGDKGEPAISTSDKGQKGEPGRDGANGFPGPLGFEGPKGERGLPGLPGSKG
DKGDMGPKGPIGKVGVCIEGVKGERGEKGDKVVCYTKSDPSIGPPGTEVITVKGPPGEKG
DKGEVGPRGDRGFDGEPGRIGMPGQVGDKGDKGAQGFIGSRGKEGLPGLPGLNGYKGDRG
ENGFNGLPGIKGNKGEMGPMGWPGEKGIQGPQGLPGGSQGRPGPPGPAGPKGNIGLPGLQ
GLQGMKGEMGPRGPPGPPGGQGINGLPGREGPMGQKGQKGEAGYPGKDGMDGPAGLPGLT
GSKGEPGMKGDRGLSIPGPKGLDGMKGLNGIPGSKGDKGQKGERGIPGDSKDGIPGPPGL
AGEKGDKGYAGRAGQNGLPGLRGPKGDSGKSCSSCIPGVKGEKGDRGRDGLPGIQGFKGE
RGPMGPPGPRGDDAAPGFPGLKGERGFPGLNGRDGPKGDKGENAIISSLPKGEKGERGFK
GDKGEPGLNGRIGPQGLPGLMGVKGDKGDKGFPGFPGINGQQGIPGIPGLQGPKGEPGVG
LDGSPGQQGMRGMRGDKGDRGFVGPKGEPGNMDCTGDLTYPGPPGDIGFPGPKGEQGERG
LPGLNGKDGKFFFHYDSMKVELILCAFFSTKGLPGYPGIKGEKGTDGLPGPVGPQGPPGI
AGEKGQKGIDGPVGEVGMDGLAGLPGPPGLAGLKGDKGFAGTGRTGLPGLPGSSGQKGDM
GPPGPMGEKGNKGQPGMMGIKGDIGYPGLPGFPGSKGEIGEPGYPGPMGPEGPAGFPGRD
GMKGNKGDRGLAGNNGMNGLPGQKGDRGYPGLSGLPGMPGKEGNSGPPGRDGMAGLPGIK
GEKGDAIPGPPGLAGQPGADGMQGLKGDKGNAGMPGMQGQKGVQGPKGDKGYHGLPGLRG
PPGDGAIKGDKGDPGIQPGATGLAGERGERGFPGLPGMKGEPGLPATSLEGVKGDKGDAG
LPGPPGIYGISGPKGDKGLRGLPGFQGPKGERGPQGPYGPMGLRGTSGLPGFPGLKGEIG
NVGLKGLKGEPGDVGLPGFSGQKGEKGQAGLPGGGEKGEKGDLGLQGPVGISGAKGDRGL
NGIPGYPGQKGDIGFSGARGPQGLPGLPGPKGDIGEPGLDARCSDIGKIIKGDRGLPGMQ
GLQGPVGPPGIGIKGDKGEPGPIGSPGPIGNQGPKGERGLDGLPGLPGLKGERGLDGLPG
ANGQDGLLGPPGPKGNVGARGEKGDKGERGLDGVPGLLGIKGEKGLAGRPGMNGLIGPQG
QRGDKGDSCVAPLITGEKGEKGERGFPGREGYAGPAGVAGEKGQVGPKGERGLDGLPGLP
GMKGERGFDGLAGPAGLKGNQGPRGYPGLAGDSASNYFTGILLVRHSQQSSIPECPHGMG
KLWDGYSLLYIEGNEKAHSQDLGFAGSCLRRFSTMPFLFCDSNSVCNYASRNDKSYWLTT
NAPKPMMPVREAAIQNYISRCVVCEAPSNVIAVHSQTESIPQCPQEWTELWIGYSFAMHT
GAGAEGGGQSLSSPGSCLEEFRATPFIECNGAAGGCHFFANKFSFWLTTIEAGKEFQKPI
SETLKSGNLRSKVSRCAVCYKP
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtgttcatattcaattacatccatcattattattcatggatgattcaagccaa
aagaaaatttttcattataaaatatacgacaatttttcattatcttatttattatggacc
atactagccattttaacaataataatcactcggcctgtgcattgtattaatgatgatacg
attatatccagagatatacaattcactggttatccatcatatggttgggatccatcaaga
acattgaatactatttgtgcggaaagaagatgtgaaccaagcctacccggttgtcgttgt
gatcctactagtacggatccaatgattatttgctgttgctgtaatcaatatcgaaataat
acacaacaacgtctttgttcacaacgagtatgtgtatttggtgattgtaattgtattggc
gaaaaaggatccagaggcccacctgggatgcccggtcctgtcggtcccgtgggtttaacc
ggacatccgggcatggaaggcgcgcccggagaacgtggtccaaagggttccagaggccca
gaagggcctagaggtccaaaaggcgatcgtggtaaaatgggaatggctggttttcctggt
atcccaggcttgccgggcgttcccggggctcaaggacccagaggttacgctggtttggac
ggatgcaacggtaccgatggaaagcctggcttgccaggccgtcagggacattccggcccg
aaaggtgaaaccgggcctattggcccgaaaggagacaaaggtgaaccggcaatttcaacg
tcggataaaggccaaaaaggtgaacctggacgagatggcgcgaatgggtttcctggccct
ttgggatttgaaggtccgaaaggagaaagaggccttcctggcttacctggatctaaagga
gataaaggtgatatgggtccgaagggccccatcggcaaagtaggtgtttgcatcgaaggc
gtcaaaggcgaacgtggtgaaaaaggcgataaagtagtttgctacacaaaatctgaccca
tctattggaccacctggtactgaagttatcactgtcaaaggtcctcctggtgaaaaaggt
gacaaaggggaagtgggaccaagaggggatcgcggttttgatggcgaaccaggaagaatt
ggcatgcccggtcaagttggtgataaaggtgacaaaggggcacaaggattcatcggaagt
cgtggaaaagaaggtttacctggtctccctggtttaaatggatacaagggggataggggg
gaaaatggcttcaatggtttacctggaattaaaggaaacaaaggagaaatgggaccaatg
ggctggcctggtgaaaaagggatacaaggcccgcaaggtctacctggtggttcgcaaggc
cgaccaggtcccccgggaccggccggtcccaaggggaatattggcctgcctgggttacaa
ggattacaaggtatgaaaggtgaaatgggacccagaggaccaccagggccccctggtggt
caaggaatcaatggattacctggtagggaagggccaatggggcaaaaaggccaaaaaggc
gaagccggatatccgggaaaagatggaatggacggtccagccggtttaccaggtttaact
gggagcaaaggcgaaccaggaatgaaaggcgatcgtggattgagcatacccggaccaaaa
ggactcgacggcatgaaaggtctcaatggaatccctgggagcaaaggcgacaaaggtcaa
aaaggtgaacgtggcatacctggcgattcaaaagatggaatacctggaccgcctggcctt
gcaggtgaaaaaggggataaaggatatgccggtagagcaggacagaatggccttccggga
ctaaggggacctaaaggtgattctggtaaatcatgttcatcatgcataccgggcgtaaaa
ggagaaaaaggtgataggggtcgagatgggctgcccggaattcaagggttcaaaggcgaa
agaggtccaatgggccccccagggcccagaggcgacgatgctgctcctggttttcctgga
ctcaaaggagaacggggttttcctggtttgaatggaagagatggtccaaaaggggacaaa
ggcgaaaatgcaatcatctcgtcattgccaaaaggcgaaaaaggtgagcgtggtttcaag
ggggataaaggcgaaccgggattgaatggaagaattggcccccaaggtctgcctggtcta
atgggagttaaaggcgacaaaggagataaaggttttcctggatttcctggcataaacggg
caacaagggatcccgggcattccaggcttgcaaggtccaaaaggcgaaccgggcgttggt
ttggatggctccccaggacaacaaggaatgcgtggaatgcggggcgataaaggcgatcgt
ggttttgtcggtccaaaaggagaaccaggaaatatggactgtaccggggatttaacatat
cctggtccgcctggtgatattggatttccagggccaaagggcgagcaaggtgaaagaggt
ttgcctggattaaatggaaaagatggtaagtttttttttcattatgattcaatgaaagtt
gaattaattttatgtgcttttttctcgacaaaagggctacccggatatcctggaataaaa
ggagaaaagggcaccgatggtttacctgggcctgttggacctcaaggcccgcccggaatc
gctggcgaaaaaggtcaaaagggcattgatggtccagttggtgaagttggaatggacggg
ctggccggtcttcctggcccacctggtttagcaggattgaaaggtgataaaggttttgct
ggaactggaagaactggtttgccaggtttgcctggtagcagtggccaaaaaggtgatatg
ggtcctcccggtcctatgggagaaaaaggaaacaaaggccagcctggaatgatgggaatc
aagggcgatattggctatcctgggttacctggttttcctggatccaagggcgaaatagga
gagccagggtatccgggaccaatgggtcccgaaggccccgccggttttccaggacgtgat
ggcatgaaaggaaataaaggtgacagaggcctagccggaaacaacggaatgaacggcttg
cccggccaaaaaggtgacagaggctatccaggtctttctggcctgcctggtatgcctgga
aaagaaggcaattccggccccccgggtcgagatggtatggctggattaccaggaataaaa
ggcgaaaaaggggatgcaatacctggacccccaggtttggctggtcaacccggtgccgat
ggaatgcaaggacttaaaggtgacaaaggaaatgccggaatgcctggtatgcagggtcaa
aaaggcgttcaaggtccaaaaggagataaaggttatcatgggttacctggtttgagggga
ccaccaggtgatggagcgataaaaggagataaaggcgaccctggtattcaaccgggcgcc
actggattagccggtgaaagaggcgaaagaggttttccagggcttccggggatgaaaggt
gagcctgggctcccagcaacaagtttggaaggtgtcaaaggagataaaggagatgctggt
ttgcctggaccaccaggaatttatggaatttccggtcctaaaggcgataaaggattgaga
ggattgccaggatttcaaggaccaaagggcgaacgtggaccacagggaccatatggccca
atgggcttgcgtggaacttccggtttgcctggttttccgggcctaaaaggagaaatcggc
aatgttggtttaaaaggattgaaaggcgaacccggtgatgttggattgcctggtttttcc
ggtcaaaaaggcgaaaaaggccaagctggcttacctggtggtggcgaaaaaggtgaaaaa
ggtgacttgggtttacaaggaccagtcggaatttcgggagccaaaggcgatagaggtttg
aacggcattcctggctatccaggacaaaagggtgacatcggttttagtggtgctcgtgga
ccacaaggactacctggcctgcctggacccaaaggcgatattggtgaacctggactggat
gcaagatgctccgatattggaaaaataatcaaaggtgaccgtggcttaccaggaatgcag
ggacttcagggaccagtcgggcccccaggaatcggaataaaaggagataaaggtgaacca
ggtcccatcggaagtccaggtcccatcggaaatcagggaccaaaaggtgaaagaggattg
gatggattgccaggacttccggggctaaaaggtgaaagaggattggatgggttacctggc
gccaatggacaagatggacttttaggtccccctggtccgaaaggaaatgttggagcacgg
ggcgaaaaaggggataaaggggaaaggggattggacggggttcctggtttgctcggtatc
aaaggagaaaaaggcttggccggaaggccaggaatgaacggattgatcggaccacaaggc
caacgtggtgataaaggcgattcttgtgtggcacccttgattactggagaaaaaggagag
aaaggtgaaaggggatttccgggccgagaaggttatgcgggaccggctggggttgcgggt
gaaaaaggacaagttggacctaaaggggaaaggggattggacggcctccctggtttgccg
ggcatgaaaggtgaaagaggtttcgatggtcttgctggtccagctggcttgaaaggaaat
cagggtcccagaggatatcctggtctagctggcgattctgcatccaattattttaccggt
atattattggtacgacatagtcagcaaagctccattccagaatgtccacatggaatggga
aaactttgggatggttacagtctactatatattgagggcaatgaaaaagctcatagccaa
gatcttggatttgccggctcttgtttacgacgattcagtacgatgccatttttgttttgt
gattcaaatagcgtctgtaattatgcaagccgtaatgataaatcctattggctaacaact
aatgcaccgaaaccaatgatgcccgtacgagaagcagccatacagaattacatcagtcgt
tgtgttgtttgtgaagcaccgagtaatgtgattgccgttcatagccaaacagaatccatt
ccacaatgtccacaagaatggacagaactttggattggttacagttttgctatgcatacc
ggagcaggcgctgaaggtggtggacaatcattatcaagtccaggtagttgtctggaagaa
ttccgtgcaacaccattcatcgagtgcaatggagctgctggtggttgtcatttttttgcc
aataaattcagtttctggctaacgaccatcgaagcgggcaaagaatttcagaaaccaatc
agtgaaacattaaaatccggtaatctacgtagcaaagttagtcgttgtgctgtttgctac
aagccatga
DBGET
integrated database retrieval system
