Dermatophagoides farinae (American house dust mite): 124495192
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Entry
124495192 CDS
T08043
Name
(RefSeq) helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124495192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfr03019
]
124495192
Enzymes [BR:
dfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124495192
Messenger RNA biogenesis [BR:
dfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124495192
mRNA degradation factors
3'-5' decay
Ski complex
124495192
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
DEXQc_Suv3
Ski2_beta-barrel
MTR4_beta-barrel
Motif
Other DBs
NCBI-GeneID:
124495192
NCBI-ProteinID:
XP_046914477
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MNSGSGRYKFAIPLDANVPISAEQFNKLVPNPAKKYPFELDTFQKQAIIHIEKGENVFVA
AHTSAGKTVVAEYAIALAFANKTQVIYTSPIKALSNQKFRDLRQEFKNVGIITGDVQLNS
EAPCLVMTTEILLQMLYASSETLNHLEFVIFDECHYVNDTKRGHVWEEVFILLPSTVKLV
LLSATVPNVIEFSDWLGRTRQRQIYVISTTRRPVPLKHYLYLGRDGKTQNQQILILDGDG
PINKTNHELATDLMDQRKAKFGFIKRTPQTERNIYLNLIRHLQKNDKLPVICFTLSRRKC
DQNLAMLLSIKEENSTLTNKRESFYIKRFIYKHLKNLDKTDFELEQVKRVSTMLVRGFGV
HHSGILPILKELTEILFSTGLVKVLFATETFAMGVNMPARTVVFDSLNKHDGICRRFLRP
AEYIQMAGRAGRRGKDTEGTVIIVAKYEVPSLVELNLVMKGSAQLLESQFRLTYHMILNM
LKSQASSIEEFLERSYREHNKVLASSSVESGIQQLTLKMNELVELSCEKCSTDINEWFEH
FKTFKEYKRSLMNKIILRASDRKLLNSGRIIVFEDTDQIVRAGLLIKSLKSANAINELVI
LFAGEKDDLEVKSIPVQEVICLLNKQVKGIDSAEINIENEKSKSSFGRNKRKFATEDAGQ
KLNDLNLPANFQLLVYVADNFIGHDKLGKLDPDTIMLLQEYGRALKSVSKGHYACIRCEQ
FLAHYHIYRARAEMQDSLEQLDFKLSNESLELLPEYRQRTEVLKDYHFLDEHLVLQPKGH
IASCLSESELIITEVVFENLLGNLSDEAIPAVLSCFIFDSKRADQSVESTQHIQEIEELD
NIIKKIVQICIKFGRAENERGIEDNDTHYLDQLNLDPVRAVYEWAKGQHFADIMKYTGLQ
EGIMVRCIQRVDELIKNVRIASRNLDLVDFQTKLERSSKLIRRDIVFMPSLYTTRDMVDV
IDHDNDNKQQNTFIQQDVVDGQIVNIEPNDYTDDDDDDDEIDLGNDFFSYRFDDTKFIEN
PEALNEENFSANFL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgaatagcggcagtggtagatataaatttgccatcccattggatgcaaatgttccgatt
tcggctgaacaattcaataaattggtaccgaatccagccaaaaaatatccatttgaattg
gatacgttccagaaacaggctatcattcatattgaaaaaggagaaaacgtttttgttgcc
gctcatacatcggcaggtaaaacggtagtggccgaatatgcaatcgcattagcatttgcc
aataaaacacaagttatatacacatcgccaataaaagctttatcaaatcaaaaatttcgt
gacctacgacaggaattcaaaaacgttggcatcattacaggtgatgttcaacttaattcg
gaggcaccatgtcttgtcatgactaccgaaattcttcttcaaatgctttacgccagttct
gaaacgcttaatcatttggaatttgtcatctttgatgaatgtcattatgttaacgatacg
aaacgtggtcatgtttgggaagaggttttcatacttttaccgtctacggttaaacttgtt
ttgctcagcgccactgtaccgaatgttattgaattttccgattggcttggtcgtacacga
caacgacaaatctatgtaatcagtacaacacgccgtccagtgccgctaaaacattatctc
tacttgggccgtgatggtaagacacagaatcaacaaattcttattcttgacggtgatggc
cctatcaacaaaacaaatcatgagttagctaccgatttaatggatcaacggaaagcaaaa
tttggtttcatcaaacgtacaccacaaaccgaacgtaacatatatctgaatctaatacgt
catctacaaaagaatgacaaactaccggtcatttgttttacattgtcgcgaagaaaatgt
gatcaaaaccttgcaatgttgttaagtatcaaagaagaaaattcaacattgacgaacaag
agagaatcattctacatcaaacgtttcatatacaaacatttgaaaaatttagacaaaacc
gatttcgagcttgaacaagtaaaacgagttagtacaatgttggtccgtggttttggtgtc
catcattcgggcattttacccatcctgaaagaattgactgaaattttattcagcactggt
ttggtgaaagttttatttgccactgaaacatttgcaatgggtgtgaatatgcccgcaaga
acggtggtgtttgattcgttgaacaaacatgatggaatttgtcgacgatttttacgacca
gccgaatatattcagatggcgggtcgtgcaggtcgacgtggtaaagatacagaaggaacg
gtcatcattgtagccaaatatgaggttccgtcattggttgaattgaatcttgttatgaaa
ggttcagcacagctattggaatcacaatttcgtcttacctatcatatgattttgaatatg
ctcaagagccaagcttcatccattgaagaatttctcgaacgttcatatcgtgaacataac
aaggtactagcttcatcatcggttgaatctggtattcaacagctcaccctcaagatgaat
gaattggttgaactttcatgtgaaaagtgttctaccgatatcaatgaatggtttgaacat
ttcaaaacgttcaaagaatataaacgatctttgatgaacaagattattcttcgagcttcg
gataggaaattattgaattcaggtcgaattatcgtatttgaagatacggatcaaatcgta
cgggctggcttattaataaaatcactaaaatctgccaatgcaatcaatgaattggtcata
ttatttgctggtgaaaaagatgacttggaagtgaaatctataccagtgcaggaagtaata
tgtttacttaacaaacaggttaaaggaattgattcagcagaaatcaacatcgaaaatgag
aaatcaaaatcatcgtttggaagaaacaaaagaaaatttgcaaccgaagatgctggccaa
aaattgaatgatctgaatttacctgcaaattttcaactactagtttatgtagcagataat
tttataggccacgataaactgggaaaattagatcccgatacaataatgttgttacaggaa
tatggccgagctttgaagtcggtgagcaaaggtcattatgcttgcattcgatgtgaacaa
tttttggcacattatcacatttatcgggcacgtgctgaaatgcaagattctcttgaacaa
ttagatttcaaactatcgaatgaaagtttggaactattacccgaatatcgacaacggacc
gaagtgttgaaagattatcattttcttgatgaacatcttgttttacagccaaaaggtcat
atagctagttgcttatcagaaagtgaattaattatcactgaagtggtattcgaaaatctt
cttggtaatctaagtgacgaagctataccggcggtattgtcttgtttcattttcgatagt
aaacgtgccgatcaaagtgttgaatcaacacaacatatacaagagattgaagaattggat
aatataatcaaaaaaattgttcaaatatgcataaaatttggacgggctgaaaatgaacgc
ggtattgaagataatgatactcattatttagatcaattgaatctggatccggtacgtgcc
gtttatgaatgggctaaaggacaacattttgccgatattatgaaatacactggtttacaa
gaaggtataatggtccgttgtatacagcgtgtggatgaattgattaaaaatgttcgaatc
gcttcacgtaatttggatcttgtggatttccaaacaaaattggaacgatcatcaaaattg
attcgtcgagatattgttttcatgccttcattatatacaactcgagatatggttgatgtt
attgatcatgataatgataataaacaacaaaacacctttattcaacaagatgttgttgat
ggccaaattgtcaacatagaacctaatgattatactgatgatgatgatgatgatgatgaa
atagatcttggtaatgattttttcagctatcgattcgatgataccaaatttattgaaaat
ccggaagcattgaacgaggaaaattttagcgccaattttctttga
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