Dermatophagoides farinae (American house dust mite): 124497876
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Entry
124497876 CDS
T08043
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03020
RNA polymerase
dfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124497876
09124 Replication and repair
03420 Nucleotide excision repair
124497876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfr03021
]
124497876
03400 DNA repair and recombination proteins [BR:
dfr03400
]
124497876
Enzymes [BR:
dfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124497876
Transcription machinery [BR:
dfr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124497876
DNA repair and recombination proteins [BR:
dfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124497876
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
AcetDehyd-dimer
Motif
Other DBs
NCBI-GeneID:
124497876
NCBI-ProteinID:
XP_046917511
LinkDB
All DBs
Position
Unknown
AA seq
1949 aa
AA seq
DB search
MSNIVTSDSKAPVREVRRVQFGIFSPDEIRRMSVTDGGIQYAEIYENGRPKIGGLMDPRQ
GVVDRTSRCQTCAGNMVECPGHFGHLELAKPVFHIGFLNKTIKILRCVCFYCSKMLISPT
NSKIKEIVAETKGNPRKRLAHVYDLCKGKNICEGTDDMDLNKENTDFNEADQQLALKKKV
NLHGGCGRYQPQIKREGLDLYAEWKHLNEDSHEKKIALTAERVHQIFKDISDEEISILGM
DPKYARPSWMMVTVLPVPPLCVRPAVVMFGSARNQDDLTHKLADIVKTNNELIKNEQNGA
ATHIIAENVKMLQFHVATFVDNEIPGIPRAQQKSGRPLKSIKQRLKAKEGRIRGNLMGKR
VDFSARTVITPDPNLRIDEVGVPRSIAQNLTFPEIVTPFNIDQLKELVCKGNNQYPGAKY
IIRDNGERIDLRFHPRPSDLHLEFGYKVERHIRNGDVIVFNRQPTLHKMSMMGHKIRVLP
WSTFRFNLSVTTPYNADFDGDEMNLHVPQSLETRAEIEQLAMVPRNIITPQSNKPVMGIV
QDTLTAVRKMTKRDVFLTQDQMMNLLMFLPTWDGKLPMPCILKPIPLWTGKQLFSLIIPG
HVSLIRNHSTHPDDEDEGPYKWISPGDTKVLIENGELLSGIVCAKTVGKSAGNLMHVVFL
EMGHETCGLFYWHIQTVINNWLLYEGHSIGIGDTFADPQTYRDIQETIKKAKQDVIEVIE
KAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVAGSKGSK
INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF
HSMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDATVRNSNGQVIQLRYGEDGLDG
SHVEFQNLPTLKPNDRQFRERFRFDATNEKYLRKTFTEDVVKDLLGNPRSLSELEQEFER
LQKDRDTLRGLFPTGDSKVVLPCNINRMIWNAQKIFHVNKRVATDLSPLKVLTGVENLVN
KLTIVPGEDPLSIKANQNATLLFRCLLRSTLCTKKITEQDRLSSEAFDWLLGEIDSKFHQ
AQVQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPS
LTVFLTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIFYDPDPLNTVIHEDQEFVNVYYE
MPDFDTSRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGEDLNCIFNDDNAEKLVLR
IRIMNPEEKSSAEEEEQIDKMEDDVFLRCIESSLLSDITLQGIESIAKVYMHLPTTDNKK
RIIITETGDYKSIAEWLLETDGTSLMRVLSERDVDPTRTYSNDICEIFSTLGIEAVRKAV
EKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDVGALMRCSFEETVDV
LIDAAMHAEIDYLKGVSENIIVGQLARIGTGSFGLLLDPEKCKLGIEIPTNLHGLGMCLE
LFVFLIIINFWLFYDLGTGLFYGMDSPSMTGSGMSPQMTPYGVSTPAYALPWASGGSGVG
VGLGMTPAAAGFSPSAASDAGFSPGYSPSWSPSGLGSPGSPSSPYLPSPSGPLSPSYSPA
SPNYMPMSPHIGVASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY
SPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPSSPNYSPSSPSYSPSYTSPYAPSSPKYSPGAASSY
SPSSPSYQPSFSPRYSSLSPKYSPSSPSYAPSSPQSYSPGASSGYSPSSPPYGRSGPDSG
IVGGGTGSSSVYSPASPTYSGVGSNGRPIGSVGAAGTSTGYSPTSPTRNYSPTSPTYSPH
ESSYSPTSPTSYSPTSPSTYSPTSPNYDE
NT seq
5850 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacatagtgaccagtgattcaaaagcacctgtgcgcgaggtacgtcgtgtacaa
tttggtatattttcgccggatgaaatacgtcgtatgtcagtcaccgatggtggtattcaa
tatgctgaaatctatgaaaatggccgaccgaaaatcggtggcttgatggatccacgacaa
ggtgttgtcgatcgaacatcacgttgtcaaacatgtgccggaaacatggttgaatgtcca
ggacattttggacatttagaattggctaaaccagtgtttcatattggtttcttgaataaa
acaataaaaatccttcgttgtgtttgtttttattgttccaagatgctaatatcaccaaca
aattctaaaataaaggagattgttgccgaaaccaaaggaaatccacgtaaacgtctggca
catgtttatgatctgtgtaaaggaaaaaatatctgcgaaggaactgatgatatggatttg
aataaagaaaacaccgattttaatgaagccgatcagcaactagcattgaagaaaaaagta
aatctacatggtggttgtggccgctatcaaccacaaatcaaacgtgaaggtttggatctt
tacgctgaatggaaacatttgaatgaagattcacatgagaaaaaaatcgcattgaccgcc
gagcgtgtacatcagattttcaaagatatctcggacgaagaaatctccatactgggtatg
gatccaaaatatgcacgacctagttggatgatggtgaccgtattaccagtgccaccatta
tgtgttcggccagctgtagtgatgtttggatcggcacgtaatcaagatgatttgacacat
aaattagccgatattgtcaagacaaataatgaattgattaaaaatgaacaaaacggagca
gccacacatattatagcggaaaatgtgaaaatgttacaatttcatgtggccacgtttgtt
gataatgaaataccgggcattccacgtgcacagcaaaaatctggacgcccattgaaatct
atcaaacaacgattgaaagcaaaagaaggacgtattcgtggcaatcttatgggtaaacgt
gttgatttctccgcacgtaccgttattacaccggatccgaatcttcgtatcgatgaagtc
ggtgtaccgcgttcaattgctcagaatctaacatttcccgagattgtcacaccatttaat
attgatcaattaaaagaactcgtatgcaaaggtaataatcaatatcctggagcaaaatat
attatacgtgataatggtgaacgtatcgatttgagatttcatccacgaccatcagatctg
catctagaatttggttataaagttgaacgtcatattcgtaatggtgatgtgattgtattt
aatcgacaaccaacattacataaaatgagtatgatgggacataaaatacgtgtattacca
tggtcaacatttcgtttcaatctatcggttacgactccatataatgctgatttcgatggt
gatgaaatgaatctacatgtaccacaatcgttggaaacacgtgctgaaatcgaacaatta
gcaatggtgccaagaaatattataacaccacaatcaaataaacctgtcatgggtatcgtc
caagacacattgacagctgtacgtaaaatgactaaacgtgatgtattcctcacacaagat
caaatgatgaatttattgatgtttctgccaacatgggatggtaaattaccgatgccttgt
atattgaaaccaataccattgtggactgggaaacaacttttctccctaatcataccagga
catgtttctttgatacgtaatcattccacacaccctgatgatgaagacgaaggcccctac
aaatggatatcacctggtgatacaaaagttttgattgaaaatggtgaacttttatccgga
attgtttgtgccaaaactgtcggcaaatcagctggaaatctgatgcatgttgtgtttcta
gaaatgggacatgaaacatgtggtttgttttattggcatatacaaaccgtaattaataat
tggctgctatatgaaggccactcgattggtattggtgatacatttgctgatccacaaaca
tatcgtgacattcaagaaacaatcaaaaaagctaaacaagatgtgattgaggtgattgaa
aaagcacataatgatgaattggaaccaacacccggtaatacattgaggcaaacattcgag
aatcaagtaaatcgtatattgaatgatgctcgtgataagactggagcgtcggctcaaaaa
tcattgtcagaatttaataacttcaaagctatggtcgtagctggatcgaaaggttcgaaa
attaatatatcacaagttattgcctgtgtaggtcaacagaatgtggaaggcaaacgtata
ccattcggttttcgtaaacgtaccttaccgcatttcattaaagatgattatggtccagaa
tcacgtggttttgtggagaattcctatttggccggtttgacaccatcggaatttttcttt
cattcaatgggtggtcgtgaaggtttgattgatacggctgtaaaaactgcagaaactggc
tatattcaacgacgattaattaaagccatggaatctgtaatggtcacctatgatgcaacg
gttcgtaattcaaacggtcaagtgattcaattacgttatggtgaagatggtttggatggt
tcacatgttgaatttcaaaaccttcctacattgaaaccgaatgatcgacagtttcgggaa
cgttttcgtttcgatgcaacgaatgaaaaatatttacgaaaaactttcactgaagatgtt
gtaaaagacttacttggtaatccacgttcattatcagaattggaacaagaatttgaacgt
ttacaaaaagatcgtgatacattacgtggattattccctacgggtgattcaaaagtcgtt
ctgccttgtaatataaatcgtatgatttggaatgcacagaaaatatttcatgtcaataaa
cgagtggctacggatctctcaccattaaaagtattgaccggtgttgaaaacctagtgaac
aaattgaccattgtacctggggaagatccattgtcgataaaagcaaatcaaaatgcaaca
cttttatttcgttgtctattaagatcaacattgtgtacgaaaaaaattaccgaacaagat
cgattgagttctgaagccttcgattggttattgggtgaaattgattcgaaatttcatcaa
gcacaagtgcaaccaggtgaaatggtcggagcattggcagcacaatcattgggtgaacca
gccactcaaatgacattgaacacatttcattatgctggtgtatcggcaaaaaatgttaca
ttgggtgtaccacgtttaaaagaaattatcaacatatcgaaaaaaccaaaaacaccatca
ttaacagtgtttttgaccggagctgctgcacgtgatgctgaaaaagccaaagatgtttta
tgtcgtttggaacatacaaccctgagaaaagtgacagctaacacggcaattttttatgat
ccagatccattgaataccgtgatacacgaagatcaagaatttgtaaatgtttattatgag
atgcccgattttgatacatcacgtatatcaccatggttgttgcgtattgaattagaccgt
aaacgtatgacggataaaaaattaacgatggaacaaattgctgaaaaaattaatgctggt
tttggtgaagatttaaattgcatattcaatgatgataatgcagagaaattagtgctgcgc
atacgtataatgaatccggaggaaaaatcatcagccgaagaagaagaacaaattgataaa
atggaagatgatgttttcttgcgttgtattgaatcatcattattaagtgatatcacatta
caaggtattgaatcgatagctaaagtttatatgcatctacctacgacggataataaaaaa
cgtatcatcatcaccgaaactggtgattacaaatcgattgccgagtggctattggaaacg
gatggtacaagtttaatgcgagtcctatcggaacgtgatgttgatccaacacgtacttat
tcgaatgatatctgtgaaatattctcaacattgggtattgaagctgtacgaaaagcagtg
gaaaaagaaatgaatcatgttatttccttcgatggttcatatgtaaattatcgtcattta
gcattgctttgtgatgttatgactgctaaaggacatttgatggccatcactcgtcatggt
attaatcgtcaagatgttggtgcattgatgcgttgttcattcgaggaaaccgtcgatgta
ttgattgatgctgcaatgcatgctgagattgattatttgaaaggtgtttccgaaaacatt
atcgttggtcaattggctagaatcggtactggctcatttggtttattattggatccagaa
aaatgtaaacttggtattgaaatacctacgaatctacatggacttggtatgtgtttggag
ttgtttgtttttttgatcattattaatttttggcttttttatgatttaggaactggttta
ttctatggtatggattcaccatcaatgactggatcgggaatgtctccacagatgacacca
tatggtgtttcaacacctgcttatgcattaccatgggcttcaggtggaagtggtgttggt
gttggtcttggtatgacaccggcagcagctggattctcaccatcagctgcgtctgatgca
ggattttcacctggatattcgccaagttggtcaccaagtggccttggcagtccaggatcc
ccatctagtccatatcttccatccccaagtggtccattatcgccatcatattcacctgca
tctcctaattatatgccaatgtcaccgcatatcggggtagcaagcccatcatattctcca
acctcaccatcttattcgccaacttcaccatcgtatagtccaacttcgccatcgtattct
ccaacctcaccatcgtattcgccaacttccccatcgtattctccaacctcacctaattat
tcaccatcgtctccatcctatagtccaacttcaccatcgtattctccgacctcaccatcg
tatagccccacatcgccatcgtattctccaacatcaccatcgtattcgccaacttcgcca
tcatattctccaacctcaccatcgtattcaccatcgccatcatattcgccaacttcccca
tcgtattctccaacatcaccctcgtattcgccaacttccccatcgtattctccaacatca
ccgtcatattcgccatcttctccaaattattcaccatcttctccatcttacagcccatcg
tatacatcaccgtatgctccatcatcgccaaaatattcacctggtgctgcttcgagctat
tcgccatcgtccccttcatatcagccatcattttcaccgagatattcatcattgtctccc
aaatattctccttcatcgccatcgtatgctccatcatcgccacagtcatattcacctggt
gcaagcagtggatattcgccatcttcaccaccgtatgggcgttccggtccagatagtgga
attgtaggtggtggcacaggttcatcatctgtttattcaccagcatcgcctacttattca
ggtgttggtagtaatggacgtcctattggatctgttggtgctgctggtaccagtacagga
tattcaccaactagtccaacaagaaattattctcctacatcaccaacatactctccacat
gaatccagttattcacccacctcacctacatcatattcaccaacatcgccgtcaacttat
tcgccgacatcaccaaattatgacgaatga
DBGET
integrated database retrieval system
