Dermatophagoides farinae (American house dust mite): 124499013
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Entry
124499013 CDS
T08043
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124499013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfr03400
]
124499013
DNA repair and recombination proteins [BR:
dfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124499013
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
AAA
MutS_I
MutS_II
AAA_lid_3
AAA_23
AAA_29
AAA_14
AAA_27
ABC_ATPase
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
124499013
NCBI-ProteinID:
XP_046918812
LinkDB
All DBs
Position
2:4560053..4565710
Genome browser
AA seq
1027 aa
AA seq
DB search
MANNDISGSKNDIIFDSEFIQFYLEIRKSQGENVFILFNHGSYYTLHDSNAEYVSKNFLN
TTESLKNFQTKNHHTVVYTCISQTRFPSLIRHLLIENNFAVEIYSKTNPKSNIKQWRLEI
EASPGYLGPFENLLYEADVNISIQLSAVYILDDENDDRNNHVSVVSIDPIACQIFLGHFQ
DNDCLRQLETILVRSNPKECFIPNAGNSTKKLSQLLKRNRVMIRKYSVQYQSDNYQLATV
LKNLAVPECREMVENFLQQTVNINEVLCPLKPLLLKQKLLVTEAENITSDASLNYPFGCF
FIKLLNPKQFLRLDLSSIQHLHLFPSKLDSKSKHSLFQILNRCKTYCGMKLLEQFLRQPS
TDYTTIQTRLDIVEFFSENPAIMDSIREQILPRIPDMTKLYKKLNTGRYQIKDVFQLYFV
LDYLRRLKTVFDNHGQQFPLVVQRMLINKLSKYLAQTNRLYMRLVQVLDLDNYAQSGEFK
LNVKTFPELTEVNSLMQQFAKRVREEHRMLQNKYDDGISLEQNKDIGWFYEINKKTIGTI
GVKSVVYRTISSKSEKSMKFLTRLLTEINDEFSTLGKHFEKLSQNCIRLVLKECQDDLYR
ISSLQSYVSLLDILTSFAKVATDSPVPFTKPKILAQGSNEIELKQFRHPILESINGGQFV
PNDIRFNQSRKVFIITGPNMGGKSTLLRSVALSVLMAQIGCFVPCESARISLTDAIYTRM
SSSDDQSLGMSTFMAEMYEIAGILKSATQNSLILIDELGRSTSTNDGFGLAQSIIEHIAR
EIRAYTLFATHFHNLGLSLSKGLLHRLHMQSSFNELQQLIIHYRALPDEESQYNSQSFGI
EVMKSVGMPEHLIRAAQELLAELDGISSRQKVNNDLEPVESSPPIVFVIGATNRVDLIDS
ALLRPGRFDKIIEVSIPKDRQSRLAIINALVKNFHFEDEQKGQMQRHEIVNEIEKYLPPL
LSGADFYAICSSAMMLCVRRTLSDNVNLTCDYDESEDEDQGPKKALNVECRLEDFKQAIR
SKYNVKL
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaatgatatttcaggttcaaaaaatgatatcatattcgattcggaatttatt
caattttatttggaaattcgaaaatctcaaggcgaaaatgtgtttattttgttcaatcat
ggatcatactatacacttcatgacagcaatgctgaatatgtttcgaaaaatttcctgaac
actactgaaagtttgaagaattttcaaacaaaaaatcatcataccgttgtgtacacttgt
atcagtcaaacacgttttccatcattaattcgtcatttgttgattgaaaataattttgct
gttgaaatctattcgaagacaaatccaaaatcgaatatcaaacaatggcgtttagaaatc
gaagcttcacctggttatctgggcccttttgaaaatcttttgtatgaagctgatgtcaat
atttccattcaattatcggctgtctacattcttgatgatgaaaatgatgatcgaaacaac
catgtttccgtcgtttctattgatcctatcgcatgtcagatttttttaggacatttccaa
gacaatgattgtctccgtcaattagagactattttagttcgttcaaaccctaaagaatgc
tttattccgaatgcaggtaattccacaaaaaaattatctcaattgttaaaaagaaatcgt
gttatgattcgtaaatattcagttcaatatcaaagtgataattatcaattggccacagta
ttaaaaaatttagctgtaccagaatgtcgcgaaatggtcgaaaattttctacagcaaact
gtcaatatcaatgaagtattgtgtccactcaaaccgttattattgaagcaaaaattgctt
gtcactgaagctgaaaatataacatcagatgcttcattgaattatccgtttggttgtttc
tttataaaattgctcaacccaaaacaatttctacgtttagatttatcatccattcagcat
ttacatttattcccatcgaaacttgattcaaaatcgaaacattcgctgtttcaaatttta
aatcgatgcaaaacttattgcggaatgaaacttttggagcaatttctccgacaaccatcg
accgattatacaaccattcagactagactagatattgtggaatttttctcggaaaaccca
gcgattatggattcgattcgagaacagattcttcctcggataccagatatgacaaaattg
tataaaaaattaaacaccggtcgctaccaaatcaaagatgtatttcaactttactttgtt
ctggattatcttcggcggctaaaaacagtctttgacaatcatggtcaacaatttccgttg
gtagtacaacgaatgttaattaataaactttcgaaatatttggctcaaaccaatcgatta
tacatgcgtctggttcaagttttagatttggacaattatgctcaatctggagaatttaaa
ctaaatgtgaaaacatttcctgaattgacggaagttaattctttgatgcaacaatttgcc
aaacgtgttcgtgaagagcatcgaatgttacagaataaatatgatgatggaatatcattg
gaacaaaacaaagacattggttggttttatgaaattaacaaaaaaactattggaacaatt
ggagttaaatccgtagtttatcgaacgatttcatccaaatccgaaaaaagtatgaaattt
ttgacccgattattgaccgagataaatgacgaattttcgactttgggaaaacattttgaa
aaattaagtcagaattgcatacgccttgtattgaaagaatgtcaggatgatttgtatcga
atttcttctttgcaatcatacgtttctcttttggacattttgacatcatttgccaaagtt
gcaaccgattctccagtgcctttcactaaaccaaagattcttgcacaaggaagcaacgaa
attgaattgaaacaatttcgacatcctattttagagtcgattaatggtggtcaattcgta
ccaaacgatatacgatttaatcaatctcgcaaagttttcataataactggaccaaacatg
ggtggtaaatcaacattattgcgatcggtagcactctctgtattgatggctcagattgga
tgttttgtaccttgtgaatctgctcgtatttctttgacggatgctatctacacacgaatg
agttcaagtgatgatcaatcactgggcatgtcaactttcatggctgaaatgtatgaaatc
gcaggcattctaaaatcagctacacaaaattccttgatattgatcgatgaactaggacgt
tcaacatctaccaacgatggatttggtttggcacaatcaatcattgaacatattgctcgt
gagatccgtgcttatacattatttgctacacatttccataatttaggattatcattatca
aaaggtttattacatcgtcttcatatgcaatccagctttaatgagttacaacaattaatt
attcattatcgtgcattgcctgacgaagaatcgcaatataattcacaatcatttggtatc
gaagtaatgaaatcggtcggaatgccagaacatctcattcgagcagcacaagagctattg
gcagaattagatggaatcagttcaagacaaaaggtgaacaatgatttggaacctgtagaa
tcatcaccgcctatagtttttgtaatcggagccactaatcgtgttgatctaatcgattca
gctttacttcgtcctggacgttttgataaaatcatcgaagtttctatccctaaggaccgg
caatctcgtttggcaatcatcaatgctcttgttaaaaatttccatttcgaagatgaacaa
aaaggccaaatgcaacggcatgaaattgtcaatgaaatagaaaaatatttaccaccgtta
ttatctggagctgatttttatgctatctgctcttcagctatgatgctttgcgttagaaga
acattgtccgacaatgtaaacctaacctgtgattacgatgaaagcgaagatgaagatcag
ggtcctaaaaaagctttaaatgtggaatgtcgacttgaagattttaagcaagcgattcgc
tcaaaatataatgtaaaattgtaa
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