Dolichospermum flos-aquae: HGD76_07090
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Entry
HGD76_07090 CDS
T06652
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dfs
Dolichospermum flos-aquae
Pathway
dfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGD76_07090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfs03019
]
HGD76_07090
03009 Ribosome biogenesis [BR:
dfs03009
]
HGD76_07090
Enzymes [BR:
dfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HGD76_07090
Messenger RNA biogenesis [BR:
dfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HGD76_07090
Ribosome biogenesis [BR:
dfs03009
]
Prokaryotic type
rRNA helicases
HGD76_07090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
HEM4
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QJB43994
UniProt:
A0A6H2BYZ6
LinkDB
All DBs
Position
complement(1415252..1416817)
Genome browser
AA seq
521 aa
AA seq
DB search
MNLSFQELGISPERATLLEGMGFTEPTNIQTQAIPQLLNGRDVVGQSQTGTGKTAAFSLP
ILERLDENLKAVQAIVLTPTRELAIQVHAAVSQFIGNSYLKAAAIYGGQSIDRQIMQLRR
GAQIVVGTPGRVIDLLDRGNLKLDQVKWFVLDEADEMLSMGFIDDVERILSQAPNERQTA
LFSATMPPSIRMLVNKFLNSPVTVTVEQPKAAPNKINQVAYMIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTSQLQSAGHSVDEYHGDLSQQARERLLIRFRNRQVRWVVATD
IAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQSFERRKQQAFERH
NRQTWQILSIPTKAQLEAQHIQKLRGQVAEALTGERLASFLPIISEMIEEYDAHAIAAAA
LQIAYDQTRPAWLISGVDLPVDESPTPKPRINKRGDGGERERSSGGGRGGRSSWSKEGRG
NDERRSSGGSGGSVKPKLKIAYNEPSSTPSNHKLGLPTGRE
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatcatttcaagaattaggcatttccccagaacgggctacattgttagaaggc
atgggttttactgaacctacaaatattcaaacccaagcaattcctcaactattaaatggt
cgggatgtagttggtcaatcgcaaacaggaacaggtaaaaccgcggctttttctctacca
attttagagcggttagatgagaacctcaaagctgtacaagcaatagttttaaccccaact
cgtgaattagcaattcaagttcatgcggctgtttcccaatttattggtaacagttacttg
aaagcagcggctatttatggtggtcaatcaattgaccgtcaaattatgcaactcagacgt
ggggcgcaaatcgttgtcgggacaccaggacgggttatagacttactagatcgtggtaac
ttgaagctagatcaagtcaaatggtttgtcttagatgaagctgatgaaatgttaagcatg
ggcttcattgacgatgtggaaagaattctttcccaagcgcctaatgaacgccaaacagca
ttattttccgcgacaatgccaccatcaattcggatgttggtaaataaatttttgaactca
ccggtgactgtcaccgttgaacaacccaaagccgcaccgaataaaatcaatcaagtggct
tacatgattcctcgtcattggacaaaagctaaagctttacaaccaattctggaaatggaa
gatccagaaacagctttaatctttgttcgcacccggcgtacagcggcagaactaaccagt
caattgcaatctgctggtcatagtgtggatgaatatcatggtgatttgtctcaacaagcg
cgggaacgcctattaatccgtttccgtaaccgtcaagtgcgttgggttgtcgctactgat
attgcagcgcgtgggttggacgttgaccaactttctcatgtaatcaactttgatttacct
gatagcgtagaaacctatgttcaccgcattggtcggactggtcgggctggaaaagaagga
acggcaatttctttagtacaatcttttgaacgccgcaaacaacaggcatttgaacgccat
aaccgtcaaacttggcaaattctctctattcctaccaaggcgcagcttgaagcccaacat
atccagaagttaagaggacaagtggcagaagctttaactggggaacggttagcttccttc
ttgccgattatcagcgaaatgattgaggaatatgatgctcatgcgatcgctgcggctgct
ttacaaatcgcttacgatcaaacccgtcctgcttggttaatatcaggagtagacctgccc
gtagacgaaagcccaactcccaaacccagaattaacaaacgtggggatggtggagaacgg
gaacgtagttctggtggtggtcgcggtggacgttcctcttggtcaaaagaaggtagaggt
aacgatgaaagacgtagtagcggtggcagtggcggtagtgttaaaccaaagttaaaaata
gcctacaatgaaccctcttctactcctagcaatcacaagttaggtttacctacgggtaga
gaatag
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