Dolichospermum flos-aquae: HGD76_14180
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Entry
HGD76_14180 CDS
T06652
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dfs
Dolichospermum flos-aquae
Brite
KEGG Orthology (KO) [BR:
dfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfs03016
]
HGD76_14180
Enzymes [BR:
dfs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HGD76_14180
Transfer RNA biogenesis [BR:
dfs03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HGD76_14180
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
HTH_RNase_II
CSD_RNase_II
KhtT_N
Motif
Other DBs
NCBI-ProteinID:
QJB45152
UniProt:
A0A6H2C007
LinkDB
All DBs
Position
complement(2916232..2918292)
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AA seq
686 aa
AA seq
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MDKGTLVEFRVKGDRRLGVIDRPDGKTSWFVVDERGQSHNIKNNQFTYTVNGQTYKPGEI
AEFLSQVQPYLDPSSLEIAWELLIEDGETVTPSQLANLLFSESTSPQCYAAHCLLSEDKL
YFKQKGDAYEPRSAAQIAERKHQIQVESQKAKGQQEFLARIEQALQGQVVEWQRLDRQRL
DALEKYATLLADVVMLKVNYDSLARACPPPASVLETMNMLGRSATPQAAFQLLIDLGLWT
SHENLFLRRSSISVQFPHQVLEVAQECWDFPPTDLDTNRLDLTHLKVYTIDDESTTEIDD
GLSWEILADGKERLWVHIADPTRLLMPDDELDLEARKRGSTVYLPTGMIPMFPEVLATGP
MSLIQGKVCCALSFGVILDAVGAVEDYCIHTGLIKPTYRLTYQDVDEMLELGVQAEPEIE
AIANWAKIRKTWRYSQGAISINMPEAMIKVKDDDINIDVLDDSSSRQLVAEMMILAGEVA
ARYGQTHNIPLPFRGQPQPELPPEEELLLLPAGFVRSCAMRRCMPKSEMSITPVRHAGLG
LDTYTQATSPIRRYSDLLTHFQLKAHLRGEGLPFSAEQLKEVMMTVSSITQEATMVERQT
NRYYALEYLRRHPEQVWQVTVLMWLREDSNLGLILLEDLGLQLPMSFRRSVSLGENLLVK
VSLADPQKDMIHFQEIMYQEAQSVTN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggataaggggacgttagttgaatttagggttaaaggcgatcgccgtcttggagtgata
gatcgtccagacggtaaaactagttggtttgtagtagatgaacgtggtcaatcccataac
atcaaaaataaccaatttacctacacggttaacggacaaacctataaaccaggggaaatc
gctgagtttttaagtcaagttcagccttatctagatccatcaagtctggaaatagcttgg
gaactactgattgaagatggagaaactgtcactcctagccaattggcaaatctgctattt
tcggaatccacatctccccagtgttatgcagcccattgtttgttatcagaagataaactc
tatttcaaacaaaaaggagacgcttacgaaccccgcagcgcagcgcaaatagcagaacgc
aagcaccagattcaagtagaatcacaaaaagccaagggacagcaggaatttttagcccgg
atagaacaggcgctccagggacaagtggtagaatggcaaagactggatcgccagcgttta
gacgcattagaaaaatatgcgactttgctggcggatgtggtgatgctgaaagtgaactat
gattctttggctcgtgcttgtccgcctccagcctcagtattagaaactatgaatatgctg
ggacgttctgctacgccccaggcggcctttcaactcttgatagatttgggtttgtggact
tcccacgaaaacctgttcctgcgccgttcatcaatttccgttcaatttcctcatcaggta
ttagaagtggcgcaagaatgttgggattttcctcctacagatttagatacaaaccgtctc
gatctcacacatctcaaggtatataccattgatgatgaaagcactacagaaatagacgat
ggtttgagttgggagatattagcagatggtaaggaacggttatgggtgcatattgctgac
ccgacgcggttattaatgccagatgatgaattagatttagaagccagaaaacggggtagt
acggtatatttacccacggggatgattcccatgttcccagaggtgttggccacaggtccc
atgagtttaattcaggggaaagtctgttgcgccctcagctttggggtgattttagatgca
gttggggctgtggaagattactgtatacacactggtttaattaagcctacctaccgcctc
acctatcaagatgtggatgagatgctggagttgggagttcaagcagaaccagaaattgag
gcgatcgctaattgggcaaaaatccgcaaaacttggcgttatagtcaaggtgctatcagt
atcaatatgcccgaagcgatgatcaaagtcaaagacgatgatatcaatattgatgtttta
gatgattcttcctcccgccaattagtcgcagaaatgatgattcttgccggagaagttgcc
gcccgttacggacaaactcataatatcccgctgccctttcgcggccaaccccaaccagaa
ttacctccagaggaagaactgctcctgcttccagccggttttgttcgttcctgtgcgatg
cgacgctgtatgcctaaaagcgaaatgagcattacaccagtgcgccatgctggtttgggt
ttagatacctacactcaagctacttcccccattcgtcgttatagcgacttactcacccac
ttccaattaaaagcgcatttacgcggcgaaggtttacccttctctgctgaacaactcaaa
gaagtgatgatgacggtcagcagcatcactcaagaagcaacaatggtggaacgacaaact
aatagatattacgctttagaatatttacgtcgtcatcctgaacaagtttggcaggtaacg
gtattaatgtggttacgagaagatagcaatttaggactaattttattagaagatttgggt
ttacaattgcctatgtccttcaggcgttctgtcagtttgggagaaaatttattagtgaaa
gttagtttggctgatccccaaaaagatatgattcacttccaggaaattatgtatcaggaa
gcccaatcagttacgaattag
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