Dactylosporangium fulvum: Dfulv_09260
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Entry
Dfulv_09260 CDS
T08473
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dfu
Dactylosporangium fulvum
Brite
KEGG Orthology (KO) [BR:
dfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfu03019
]
Dfulv_09260 (hrpA)
Enzymes [BR:
dfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Dfulv_09260 (hrpA)
Messenger RNA biogenesis [BR:
dfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Dfulv_09260 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
NACHT
nSTAND_NTPase5
T2SSE
nSTAND3
AAA_16
ResIII
AAA_30
PhoH
AAA_23
AAA_25
SLFN-g3_helicase
NAT10_TcmA_helicase
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
UWP84403
UniProt:
A0ABY5W6S1
LinkDB
All DBs
Position
1995743..1999603
Genome browser
AA seq
1286 aa
AA seq
DB search
MSELRARLAGLMPLDQHRLRRRIDGAKKSHHVQAIAEAIRADVERAEQRVAARRAAVPEV
SYPEQLPVSQRKDEILAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVTGQIGHTQPR
RIAARTVAERVAEELGTQLGETVGFKVRFSDQSGDQTMVKVMTDGILLAEMQQDRLLHQY
DTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKIIITSATIDPERFSRHFGDAPIVEVSG
RTYPVEVRYRPIEAPDEGEDDVDQFDAICNAVQELQAEGPGDVLVFLSGEREIRDTADAL
ARLDLPNTEILPLFARLSFAEQHRVFQSHAGRRIVLATNVAETSLTVPGIKYVIDPGTAR
ISRYSHRLKVQRLPIEPISQASANQRKGRCGRTSDGICIRLYSEEDFEARPEFTDPEILR
TNLASVILQMISLGLGDLAAFPFIDPPDRRNVTAGVQLLEELGALESGGGADGRRLTQLG
RRLSQLPVDPRLARMVLEAERNGCVREVMVITAALSIQDPRERPADKQAQAQQLHARFAD
KDSDFVGYLNLWNYLQEKQKELSSNQFRKLCRAEFLNYLRVREWQDIFSQLRSVLRTMDV
SVNEEPASPYQIHVSLLSGLLSHVGLKDAEKNEYLGARGARFAVFPGSALFRKTPRWVMA
AELVETTRLWARVAARIEPEWIEPLAQHLVKRNYSEPHWEKKAAAVMAMEKVTLYGVPIV
SSRKVNYGRIDPVLSRELFIRHALVEGDWETHHAFFAENRRLLDEVEELENRARRRDILV
DDETLFEFYDQRIAPEVVSGRHFDSWWKKTRRDQPDLLTFDPAMLVNAGADAVRQEQYPD
AWEQDGQRFRLTYQFEPGTDADGVTVHIGLPLLARVRDADFSWQVPGLREELVTSLIKSL
PKALRRNFVPAPDTARDALAGMPVREGHLLDELERELRRLTGGITVPREAWDWSRVPEHL
KMTFRIIDDAGAVLAEDKNLEELRTRLAPKVEETVAEAAVDVTRSGLTSWDFGELPQTLS
RKVAGHTLTVYPALVDEGTSVAIKAFDLPARRQLEMWAGTRRLLLLTLPPAAKFVQGRLS
NEAKLALSRNPHRNAVDLLDDCAACAVDQLMSDAGGPAWDAAGFTALRDRVRADVVDLTL
DVVGSVRKILAAAYDVEQRLARTKNPLLLPALTDMRQQLAKLVYRGFATDTGWQRLPDLE
RYLRGIERRLDKVPTDPARDRDRMLTVQEVQREYDELAASMTMSPQLREIRWMIEELRVG
LFAQALGTAFPVSDVRIYRAMDALSG
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgagctccgggcccggctggccggcctgatgccgctggaccagcaccggctgcgc
cggcggatcgacggggcgaagaagtcccaccacgtgcaggccatcgccgaggcgatccgc
gccgacgtggagcgggccgagcagcgggtcgccgcccgccgcgccgccgtgcccgaggtg
agctatcccgagcagctgccggtcagccagcgcaaggacgagatcctggcggcgatccgg
gaccaccaggtcgtgatcgtcgcgggtgagaccggctcgggcaagacgacgcagcttccg
aagatctgcctggagctgggccggggcgtaacgggacagatcggccatacgcagccgcgc
cggatcgccgcccgtaccgtcgcggagcgggtcgccgaggagctgggcacccaactgggt
gagaccgtcgggttcaaggtgcggttctcggaccagtccggcgaccagacgatggtcaag
gtgatgacggacggcatcctgcttgccgagatgcagcaggatcggctgctccaccagtac
gacaccctgatcatcgacgaggcgcacgagcgcagcctcaacatcgacttcatcctcggg
tacctcaagcagctgctgccgcgccgccccgatctcaagatcatcattacctcggcgacg
atcgaccccgagcggttctcccgccacttcggcgacgccccgatcgtggaggtgtccggc
cgcacgtatccggtggaggtccggtaccggccgatcgaggcacccgacgagggtgaggac
gacgtcgaccagttcgacgccatctgcaacgccgtccaggagttgcaggccgaggggccg
ggcgacgttctcgtgttcctcagcggcgagcgggagatccgcgacaccgccgacgccctg
gcccgcctcgacctgcccaacaccgagatcctgccgctgttcgcgcggctgtcgttcgcc
gagcagcaccgggtcttccagtcgcacgccgggcgccggatcgtgctggcgacgaacgtg
gcggagacgtcgctgacggtgcccggcatcaagtacgtgatcgatcccggcacggcgcgg
atctcgcggtacagccaccgcctgaaggtgcagcggctgccgatcgagccgatctcgcag
gcgtcggcgaaccagcggaagggccgctgcgggcggacctccgacggcatctgcatccgc
ctctacagcgaggaggacttcgaggcccgcccggagttcaccgacccggagatcctccgg
acgaacctggcctccgtcatcctgcagatgatctcgctgggcctcggcgacctggccgcg
ttcccgttcatcgacccgccggaccgccgcaacgtgaccgccggtgtgcagctgctcgag
gagctgggcgcgctggagagcggcggcggtgcggacggccggcgcctcacccagctgggc
cggcggctgtcgcagctgccggtcgacccgcggctggcccggatggtgctggaggcggag
cgcaacggctgtgtccgcgaggtcatggtcatcacggcggcgctgtcgatccaggatccg
cgcgagcgcccggcggacaagcaggcccaggcgcagcagctgcacgcccgcttcgccgac
aaggactccgacttcgtcggctacctgaacctgtggaactacctgcaggagaagcagaag
gagctgtccagcaaccagttccgcaagctgtgccgggccgagttcctcaactacctgcgg
gtccgcgagtggcaggacatcttcagccagctgcgctcggtgttgcggaccatggacgtg
tcggtgaacgaggagccggcttcgccgtaccagatccacgtctcgctgctgtcgggcctg
ttgtcgcacgtcgggctcaaggacgccgagaagaacgagtacctcggcgcgcgcggtgca
cggttcgcggtgttccccggctcggcgctgttccgcaagacgccccgctgggtgatggcc
gcggagctggtggagacgacccggttgtgggcgcgggtcgcggcccggatcgagccggag
tggatcgagcccctggcccagcacctggtgaaacgcaactacagcgagccgcactgggag
aagaaggcggccgcggtcatggcgatggagaaggtgacgctgtacggcgtgccgatcgtc
tcctcgcggaaggtcaactacggccggatcgacccggtgctgtcacgggagctgttcatc
cggcacgcgctcgtcgagggcgactgggagacccaccacgcgttcttcgccgagaaccgg
cgtctgctcgacgaggtcgaggagctggagaaccgggcccgccgccgggacatcctggtc
gacgacgagacgctgttcgagttctacgaccagcggatcgcgccggaggtcgtctccggc
cggcacttcgacagctggtggaagaagacccgccgcgaccagccggacctgctgaccttc
gacccggcgatgctcgtgaacgcgggcgcggacgcggtgcggcaggagcagtacccggac
gcgtgggagcaggacgggcagcggttccggttgacgtatcagttcgagccgggcaccgac
gcggacggcgtcaccgtccatatcggactgccgctgctggcccgggtgcgggacgccgac
ttcagctggcaggtgccgggcctgcgcgaggagctggtgacgtcgctcatcaagtcgctg
ccgaaggcgctgcgccgcaacttcgtccccgccccggacaccgctcgtgacgcgctggcc
ggcatgccggtccgcgagggacatctgctggatgagctggagcgggagctgcgccgcctg
accggcgggatcacggtgccccgggaggcgtgggactggagccgcgtcccggagcacctg
aagatgacgttccggatcatcgacgacgccggtgccgtgctcgcggaggacaagaacctg
gaggaactgcggaccaggctggcgccgaaggtggaggagacggtcgccgaggcggccgtg
gacgtcacccgcagcggcttgacctcgtgggacttcggggagctgccgcagacgctctcg
cggaaggtggccgggcacacgctgacggtgtatccggcactggtcgacgagggcacctcg
gtcgcgatcaaggcgtttgacctgccggcccgccggcaactggagatgtgggccgggacc
cgccgcctgctgttgctgaccctgcccccggcggcgaagttcgtccagggccggctctcc
aacgaggcgaagctggcgctgagccgcaacccgcaccgcaacgccgtcgacctgctcgac
gactgcgcagcgtgtgccgtcgaccagctcatgagcgacgccggcggcccggcgtgggac
gcggcagggttcacggcgctgcgtgaccgtgtccgggccgatgtggtcgacctgacactc
gacgtggtcggcagcgtgcggaagatcctggccgccgcgtacgacgtggagcagcgtctt
gcccgcaccaagaacccgctgctgctgccggcgctgaccgacatgcgccagcagttggcg
aagctggtgtaccgcgggttcgccaccgacaccggctggcagcgcctgccggacctggag
cgctacctgcgcggcatcgaacggcgcctcgacaaggtgccgaccgacccggcccgcgac
cgggaccggatgctcaccgtgcaggaggtgcagcgggagtacgacgagctggcggccagc
atgacgatgtcaccgcagctgcgcgagatccgctggatgatcgaggaactgcgggtgggc
ctgttcgcgcaggcgctcggcaccgcgtttccggtctccgacgtgcgcatctaccgggcg
atggacgcgctctccggctga
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