Dactylosporangium fulvum: Dfulv_11890
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Entry
Dfulv_11890 CDS
T08473
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dfu
Dactylosporangium fulvum
Pathway
dfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dfulv_11890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfu03019
]
Dfulv_11890
03009 Ribosome biogenesis [BR:
dfu03009
]
Dfulv_11890
Enzymes [BR:
dfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dfulv_11890
Messenger RNA biogenesis [BR:
dfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dfulv_11890
Ribosome biogenesis [BR:
dfu03009
]
Prokaryotic type
rRNA helicases
Dfulv_11890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UWP87417
LinkDB
All DBs
Position
2542530..2544218
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AA seq
562 aa
AA seq
DB search
MTSFADLGLRDELLKALSGLGYEEPTPIQREAIPPMLAGRDLLGQAATGTGKTAAFALPL
LQRMPPPGGDNPSALVLVPTRELAVQVSEAIHRYGRDLGTRVLPIYGGQPIGRQLRALEQ
GVDVIVATPGRALDHLGRGTLRLHDLHVVVLDEADEMLDMGFAEDIEAILQETPEDRQTV
LFSATMPPRIDGLARSHLNDPVRIQIGREPTPAGEAPLVRQVAYVVTRAHKPAALGRVLD
VEAPGAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMARLRNGTADLLVA
TDVAARGLDVEHLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIE
RVTKQRIVIEKVPTVADLRARRLELTRAALQESLLADKDLERFRVVVDTLTDEFDLVEIA
LAAVKLAHESGGVGDGDQEEIPEVTIRPPRERDDERPGRRVSVRDADGRGRGRDGGRRTP
PGGMTRLFVGAGRSAGIRPQDLVGAITGESSLTGRDIGAIEITDRFSLVEIPEQSVDEVI
DTLRRTTLKGRRPVVRRERSRV
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcttcgccgacctcggcctgcgggacgagttgctcaaggcactctcgggactc
ggctacgaggaaccgaccccgatccagcgcgaggcgatcccgccgatgctcgccggccgc
gacctgctcggccaggcggcgaccggcaccgggaagacggccgcgttcgcgctgccgctg
ctgcagcgcatgccgccgcccggcggtgacaacccgtcggccctggtcctggtgccgaca
cgcgagctggcggtccaggtgtcggaggccatccaccggtacgggcgggacctgggcacc
cgcgtcctgccgatctacggcgggcagccgatcggccgccagctgcgggcgctggagcag
ggtgtcgatgtgatcgtcgcgaccccgggccgggcgctggaccatctcggccgcggcacg
ctgcgcctgcacgacctgcacgtggtggtgctcgacgaggccgacgagatgctcgacatg
ggcttcgccgaggacatcgaggcgatcctccaggagaccccggaggaccgccagacggtg
ctgttctccgcgacgatgccgccccgcatcgacggcctggcccgcagccacctcaacgac
ccggtccggatccagatcggccgcgagcccacccccgcgggtgaggcgccgctggtccgg
caggtcgcctacgtcgtgacccgcgcgcacaagcccgccgccctcggcagggtgctcgac
gtcgaggcgcccggcgcggcgatcgtgttctgccgcacccgcgacgaggtcgaccagctc
accgagacgctcaacggccgggggtatcgtgccgaggcgctgcacggcggcatgggccag
gagcagcgcgaccgggtgatggcgcggctgcgcaacggcaccgccgacctgctcgtcgcc
accgacgtcgccgcccgcggcctcgacgtcgagcacctgacgcacgtggtcaactacgac
gtgccgtcggccccggagtcgtatgtgcaccgcatcggccgggtcggccgcgccggccgt
gagggtgtggccatcacgctcgccgagccgcgcgagcaccgcatgctcaagacgatcgag
cgggtcaccaagcagcgcatcgtgatcgagaaggtgccgacggtcgccgacctgcgggcc
cgccgcctggagctgaccagggccgccctgcaggagagcctcctggccgacaaggacctg
gagcggttccgggtggtcgtcgacacgctgaccgacgagttcgacctggtcgagatcgcg
ctggcggcggtgaagctggcgcacgagtcgggcggtgtcggcgacggtgaccaggaggag
atcccggaggtcaccatccgtccgccgcgcgagcgggacgatgagcggccgggccggcgg
gtcagcgtccgcgacgccgacgggcgcggccggggccgggacggcgggcggcggaccccg
ccgggcggtatgacccggctgttcgtcggtgccggccgcagcgcgggcatccggccgcag
gacctcgtgggcgcgatcacgggcgagtcgagcctcaccggccgcgacatcggcgcgatc
gagatcaccgaccggttctcgctggtcgagatcccggagcagtcggtggacgaggtcatc
gacaccttgcggcgcacgacgctgaagggccgccgaccggtcgtccgccgcgagcgcagc
cgcgtctag
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