Dactylosporangium fulvum: Dfulv_13275
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Entry
Dfulv_13275 CDS
T08473
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dfu
Dactylosporangium fulvum
Brite
KEGG Orthology (KO) [BR:
dfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfu03016
]
Dfulv_13275
Enzymes [BR:
dfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Dfulv_13275
Transfer RNA biogenesis [BR:
dfu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Dfulv_13275
Prokaryotic type
tRNA splicing ligases
Dfulv_13275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UWP87431
UniProt:
A0ABY5WE63
LinkDB
All DBs
Position
complement(2857834..2859255)
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AA seq
473 aa
AA seq
DB search
MRLVQESDYRFRIDPYGGMRVPGVVFASRALLPDPAADKSLEQVANVATLPGVVDASYAM
PDMHWGYGFPIGGVAATDVDAGGVVSPGGVGFDISCGVRLLAADLDRQELTEPAVRGLMD
GLDAAIPRGMSHRAVWTLHDARQLREVLAEGARYAVQQHHGVPRDLERCEDTGAMAGADP
GQVGERAVQRGLGQVGSLGSGNHFLEIQAVDRVYDERVAGAFGLRAGQVCVMIHCGSRGL
GHQICTDYVRVMERTAGRFGITVPDRQLACVPVTSPEGRAYLGAMAAAANYARANRQLLA
EAARHVFDRITGRELALVYDISHNLAKLETHEVAGAARQLCVHRKGATRALPPGHPDLPA
DLHDAGQPVLIPGTMGTASYVLTGRPGGPAFASTCHGAGRALSRHQAAKVVRGQELRRRL
EAGGIAVRGASWRGLAEETPEAYKDIDTVVDAAQGAGLCARVARLVPIGVVKG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
gtgaggctggtgcaggagtccgactaccggttccgcatcgatccgtacggcgggatgcgg
gtgccgggcgtggtgttcgcgtcgcgggcactcctgcccgaccctgccgccgacaagtcc
ctcgagcaggtggccaacgtcgcgacgctgcccggggtggtggacgcgtcgtacgccatg
ccggacatgcactgggggtacgggtttccgatcggcggggtcgccgccaccgacgtcgac
gccggcggggtggtctcccccggcggggtcgggttcgacatctcctgcggtgtccggctg
ctcgccgccgacctcgaccggcaggagctcaccgagccggcggtacgagggttgatggac
gggctcgacgcggcgatcccccgcggcatgagccaccgcgcggtgtggacgctgcacgac
gcccggcaactgcgggaggtcctggcggagggcgcccggtacgccgtacagcagcatcac
ggggtaccgcgggatctcgaacgctgcgaggacaccggcgcgatggcgggcgccgacccc
gggcaggtcggcgagcgggcggtgcagcgcggcctgggccaggtgggcagcctcgggtcg
ggcaaccacttcctggagatccaggccgtcgaccgggtgtacgacgagcgggtggccggt
gcgttcgggctgcgcgccggccaggtgtgcgtgatgatccactgcgggtcgcgcgggctc
ggtcaccagatctgcaccgactacgtgcgggtcatggagcgcaccgccggcaggttcggc
atcacggtgccggaccggcagctggcgtgcgtgccggtcacgtcgccggagggccgggcg
tacctcggggcgatggccgcggcggccaactacgcccgcgccaaccggcagctgctcgcc
gaggcggcccggcacgtgttcgaccggatcaccgggcgggagctggcgctggtgtacgac
atctcgcacaacctcgccaagctcgagacgcacgaggtggccggggcggcgcggcagttg
tgcgtgcaccgcaagggcgccacccgggcgttgccgccgggccacccggacctgccggcg
gacctgcacgacgccgggcagccggtgctcatcccgggcaccatgggcaccgcgtcctac
gtgctcaccggccggccgggcgggccggcgttcgcgtcgacgtgccacggcgccggccgt
gcgctcagccgccaccaggcggccaaggtggtgcgcggccaggagctccgccggcgcctg
gaggccggcggcatcgcggtgcgcggtgcgtcgtggcgcggcctggccgaggagaccccg
gaggcgtacaaggacatcgacaccgtcgtggacgcggcgcagggtgccgggctgtgcgcg
cgggtcgcgcggctggtgccgatcggcgtggtcaaggggtag
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