Deinococcus grandis: DEGR_01360
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Entry
DEGR_01360 CDS
T06640
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dga
Deinococcus grandis
Pathway
dga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DEGR_01360 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dga03019
]
DEGR_01360 (rnj)
Messenger RNA biogenesis [BR:
dga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DEGR_01360 (rnj)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BBN93403
LinkDB
All DBs
Position
complement(138115..139740)
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AA seq
541 aa
AA seq
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MSNPSKAPRPEGAAPHLEVIPLGGMGEIGKNITAYRFEDEIMVVDAGLAFPESHQMGIDL
IIPRIDYLQQNAGLIKGWILTHGHEDHIGGLPYILPRLPRVPVYGAGLTLGLVREKLSEF
GIKDGEVDLREVDLSDKVKIGTHFQVEFFRMTHSIPDNAGYLLTTPAGVVMHTGDFKLDE
EPSDGKTSDLARIEQAGKDGITLLLSDSTNAERQGRTVSEAEVARNLETLIAGLKGRVFL
TTFASNVHRVQNVINIAHRQRRRVVMEGRSMIKYAQVAQTLGYMELPEPFLASDEVGGLQ
DQQVLYVCTGSQGQPMSVLSRLAFGNHAKIALRRGDSVILSSNPIPGNEEAVNLVINRLY
EIGVDVYYPPNYRVHASGHGSQEELATILNLARPKYFLPWHGEPRHQINHARNGDVVRVS
QDDFKVTGTVPAGAVYVDGLGVGDIGDDVLLDRVNMSQEGILIMTAVLHPTPHVEIVSRG
FVRANRELDAQIRKVALDAIEQGLREKKRLEDVRDDMYGAVRRFVRKVTGRNPVLIPLIV
D
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaccccagcaaggccccccgccccgagggcgcggccccacacctcgaagtcatc
ccgctcggcggcatgggcgagatcggcaagaacatcaccgcgtaccggttcgaagacgag
atcatggtcgtcgacgcgggcctggcgttccccgagagccaccagatgggcatcgacctg
atcatcccccgcatcgactacctgcagcagaacgccggactgatcaagggctggatcctc
acccacgggcacgaggaccacatcggcgggctgccgtacatcctgccccgcctgccgcgc
gtgccggtgtacggcgcgggcctgaccctgggcctcgtgcgcgagaaactttccgagttc
ggcatcaaggacggcgaggtggacctgcgcgaggtggacctcagcgacaaggtcaagatc
ggcacgcacttccaggtcgagttcttccgcatgacccactccatccccgacaacgccggg
tacctgctcaccacccccgccggggtcgtcatgcacaccggggacttcaagctcgacgag
gaacccagcgacggcaagaccagcgacctcgcccgcatcgagcaggccgggaaggacggc
atcacgctgctcctgagcgactccacgaacgccgagcgtcagggccgcaccgtcagcgag
gccgaggtcgcccgtaacctcgagaccctcatcgcgggcctcaagggccgggtgttcctg
acgaccttcgcgtcgaacgtgcaccgcgtgcagaacgtcatcaacatcgcccaccgccag
cgccgccgcgtcgtcatggaaggccgcagcatgatcaagtacgcgcaggtcgcccagacc
ctgggctacatggaactgcccgaaccgttcctggccagcgacgaggtcggcggcctgcag
gaccagcaggtgctgtacgtctgcaccggcagccagggccagcccatgagcgtcctgtcg
cgcctggcgttcgggaaccacgccaagatcgcgctgcgccgcggcgacagcgtcatcctg
tcgagcaaccccatccccggcaacgaggaagccgtgaacctcgtcatcaaccgcctgtac
gagatcggcgtggacgtctactaccccccgaactaccgcgtgcacgcctccgggcacggc
agccaggaagaactcgcgaccatcctgaacctcgcccggcccaagtacttcctgccctgg
cacggcgaaccccgccaccagatcaaccacgcccgcaacggcgacgtcgtgcgcgtgtcc
caggacgacttcaaggtcaccggcaccgtccccgccggggccgtgtacgtggacggcctg
ggcgtcggcgacatcggcgacgacgtgctgctcgaccgcgtgaacatgagccaggaaggc
atcctgatcatgaccgccgtgctgcaccccaccccccacgtcgagatcgtctcgcgcggc
ttcgtgcgcgccaaccgcgaactcgacgcgcagatccgcaaggtcgccctggacgccatc
gaacagggcctgcgcgagaagaagcgcctcgaggacgtccgcgacgacatgtacggcgcc
gtccgccgcttcgtgcgcaaggtcacgggccgcaaccccgtcctgatccccctgatcgtc
gactga
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