Deinococcus grandis: DEGR_06540
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Entry
DEGR_06540 CDS
T06640
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dga
Deinococcus grandis
Pathway
dga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DEGR_06540 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dga03021
]
DEGR_06540 (rpoB)
03400 DNA repair and recombination proteins [BR:
dga03400
]
DEGR_06540 (rpoB)
Enzymes [BR:
dga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DEGR_06540 (rpoB)
Transcription machinery [BR:
dga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DEGR_06540 (rpoB)
DNA repair and recombination proteins [BR:
dga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DEGR_06540 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BBN93921
LinkDB
All DBs
Position
complement(703269..706730)
Genome browser
AA seq
1153 aa
AA seq
DB search
MDMSLTGKGPRIERFGDIADVIPLPNLTEIQVNSFRAFLQADRAPDGRDNVGLQSAFKEV
FPIDETEKGRSTGLVLDFLEYRLGEPPYTPEECREKDVTYQAPMYAKLQLIHKDSGLIKE
DQVFLGDLPLMTEDGSFVINGADRVIISQIHRSPGVYFTSSYKGIKKMYTGAIIPMPKRG
PWIELEFAGGILEMKVNKRKFPVAMLLRVLGYDDASLKALFTEFEPDMELPEDKSAGMGA
DEALLRLFTVLRPGDPPKRDKAIQYLYGLLADPRRYDLGEPGRFKMNTKLGVQREERTLL
NFEDGKFTDAGLVDTIRYLMALQYGRETVSMADGDGVLHDVPVGEDDIDHLGNRRVRTVG
ELLADQLRVGMGRMARGVRERMLLGNPDAATPTKLVNNRPIVAAMREFFGRSQLSQFKDQ
TNPLSDLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPIETPEGANIGLISSLAS
YAKVNDLGFIEAPYRKVENGRVSDDVIYMTADIEDRYTVAQANSPLNDDGTFSDERVLAR
RKGDPLWYTPEEVDYMDVSPKQIVSINTSLIPFLEHDDANRALMGSNMQSQAVPLVRADS
PAVGTGVERRVVTDSGTSVVSDVTGRVTYVDARNIQVTLTEDAPAIGYSAGNVRTFELVR
FTRSNQGTNLDQHPIVDIGDTVSAGQVIADGPASDLGRLALGQNITIAIMPFDGFNFEDA
ICISEGLVRKDFYTSVHIEKDEIEARDTKLGPEKITRDIPGLSEAALRDLDEDGIVRVGA
EVKPGDILVGKTSFKGESEPTPEERLLRSIFGEKAREVKDTSLRVQSGQGGIVVKTVRFR
RGDEGVDLKPGVREMVRVYVAQKRQLQVGDKVANRHGNKGVVSKIMAPEDMPYLEDGTPV
DLVFNPLGVPSRMNLGQILETHLGEVARLTGQKFETPVFDSVTEATIKEMLEVAAAERIQ
RNKDDGFELDKREQEVLDRAAKLGVISDTSGDYEKSQMELSRTGKSVLYDGRTGEPISGP
VVVGTMYVMKLYHMVEDKLHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAA
HVLQEMLTIKSDDIDGRDAAYQSIVKGEEVSGSTIPESFKVLVKELHSLGLDVEVLDNGD
KAVDIFEGMMPKR
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
gtggacatgagtttgaccggtaaaggaccccgcatcgagcgattcggtgacatcgcggac
gtgattccgcttcccaacctgaccgagattcaggtgaactccttcagggccttcctgcag
gccgaccgggcccccgacgggcgtgacaacgtcgggctgcagagcgccttcaaggaagtc
ttccccatcgacgagaccgagaagggccgcagcaccggtctggtgctggacttcctggag
taccgtctgggcgagccgccctacacccccgaggagtgccgcgagaaggacgtcacctac
caggcgcccatgtacgccaagctccagctgatccacaaggactcggggctcatcaaggaa
gatcaggtgttcctgggcgacctgcccctgatgaccgaggacgggtctttcgtcatcaac
ggcgcggaccgcgtgatcatctcccagatccaccgcagccccggcgtgtacttcacctcg
tcctacaagggcatcaagaagatgtacaccggcgcgatcatccccatgcccaagcgcggc
ccctggatcgaactggagttcgcgggcggcatcctggaaatgaaggtcaacaagcgcaag
ttccccgtggcgatgctgctgcgcgtcctcggctacgacgacgccagcctcaaggcgctg
ttcacggagttcgagccggacatggaactccccgaggacaagagcgcgggcatgggcgcc
gacgaggccctgctgcgcctgttcacggtcctgcgccccggcgatccgcccaagcgcgac
aaggccatccagtacctgtacgggctgctggccgacccgcgccgctacgacctgggcgaa
cccggccgcttcaagatgaacaccaagctgggcgtgcagcgtgaagagcgcaccctgctg
aacttcgaggacggcaagttcacggacgccggtctggtggacaccatccgctacctgatg
gcgctgcagtacggccgcgagaccgtcagcatggccgacggcgacggcgtactgcacgac
gtgcccgtgggcgaggacgacatcgaccacctcggcaaccgccgcgtgcgcaccgtgggc
gaactgctcgccgaccagctgcgcgtgggcatgggccgcatggcgcgtggcgtgcgcgag
cgcatgctgctgggcaaccccgacgccgcgacccccacgaaactcgtgaacaaccgcccc
atcgtggcggccatgcgcgaattcttcggccgcagccagctgagccagttcaaggaccag
accaaccccctgtcggacctgcgccacaagcgccgtatctccgcgctggggccgggcggt
ctgacccgcgaacgcgccggcttcgacgtgcgcgacgtgcaccggacccactacggccgc
atctgcccgatcgagacgcccgaaggcgccaacatcggcctgatctcctcgctcgcctcc
tacgcgaaggtcaacgacctgggcttcatcgaggccccgtaccgcaaggtcgagaacggc
cgcgtcagcgacgacgtgatctacatgaccgccgacatcgaggaccggtacaccgtcgcg
caggcgaacagccccctcaacgacgacggcaccttcagtgacgagcgcgtcctggcccgc
cgcaagggcgacccgctgtggtacaccccggaagaagtggactacatggacgtgtccccg
aagcagatcgtgtccatcaacacgtccctgattcccttcctggagcacgacgacgccaac
cgcgccctgatgggttcgaacatgcagtcgcaggccgtgccgctcgtgcgtgccgacagc
cccgccgtggggaccggcgtcgagcgccgcgtggtgaccgacagcggcaccagcgtcgtg
agcgacgtgaccggccgcgtgacgtacgtggacgcccgcaacatccaggtcaccctgacc
gaggacgcgcccgccatcggctacagcgccggcaacgtccgcaccttcgaactcgtgcgt
ttcacgcgcagcaaccagggcaccaacctcgaccagcaccccatcgtggacatcggtgac
acggtgagcgccggtcaggtcatcgccgacggccccgccagcgacctcggccgcctcgcg
ctgggtcagaacatcacgattgccatcatgcccttcgacggcttcaacttcgaagacgcg
atctgcatcagcgagggtctggtccgcaaggacttctacaccagcgtgcacatcgagaag
gacgagatcgaggcgcgcgacaccaagctcgggcccgagaagatcacccgcgacatcccc
ggcctgtccgaggccgcgctgcgcgacctcgacgaggacggcatcgtccgcgtgggcgcc
gaagtcaaacccggcgacatcctcgtcggcaagaccagcttcaagggcgagtccgagccc
acccccgaagagcgcctgctgcggtcgatcttcggtgagaaggcccgcgaagtgaaggac
acctcgctgcgcgtgcagtccggccagggcggcatcgtcgtgaagaccgtccgcttccgc
cgcggcgacgagggcgtggacctcaagcccggcgtgcgtgaaatggtccgcgtgtacgtg
gcccagaagcgccagctgcaggtgggcgacaaggtcgccaaccgccacgggaacaagggc
gtggtctccaagatcatggcccccgaggacatgccctacctcgaagacggcacccccgtc
gacctcgtgttcaaccccctgggcgtgccctcgcgcatgaacctcgggcagatcctcgaa
acccacctgggtgaagtggcccgcctcacggggcagaagttcgagaccccggtcttcgac
tccgtcaccgaggcgaccatcaaggaaatgctcgaagtggccgccgccgaacgcatccag
cgcaacaaggacgacggcttcgaactcgacaagcgcgagcaggaagtcctcgaccgcgcc
gcgaaactcggcgtgatcagcgacaccagcggcgactacgagaagtcccagatggaactc
agccgcaccggcaagagcgtcctgtacgacggccgcaccggcgaacccatcagcggcccc
gtcgtggtcggcaccatgtacgtcatgaagctgtaccacatggtggaagacaagctgcac
gcccgctctaccggcccctacagcctcatcacccagcagccgctgggcgggaaggcccag
ttcggcggccagcgcttcggggagatggaagtgtgggcgctcgaagcgtacggcgccgcg
cacgtcctgcaggaaatgctcaccatcaagtccgacgacatcgacggccgcgacgccgcg
taccagagcatcgtcaagggcgaggaagtctcgggcagcaccatccccgaatcgttcaag
gtgctcgtcaaggaactccactcgctgggcctcgacgtcgaagtgctcgacaacggcgac
aaggccgtcgacatcttcgaaggcatgatgcccaagcgctaa
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