Deinococcus grandis: DEGR_08060
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Entry
DEGR_08060 CDS
T06640
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dga
Deinococcus grandis
Brite
KEGG Orthology (KO) [BR:
dga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dga03032
]
DEGR_08060 (topA)
03400 DNA repair and recombination proteins [BR:
dga03400
]
DEGR_08060 (topA)
Enzymes [BR:
dga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DEGR_08060 (topA)
DNA replication proteins [BR:
dga03032
]
Prokaryotic type
DNA Topoisomerases
DEGR_08060 (topA)
DNA repair and recombination proteins [BR:
dga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DEGR_08060 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
BBN94073
LinkDB
All DBs
Position
complement(857413..860325)
Genome browser
AA seq
970 aa
AA seq
DB search
MPRSSAHTLVIVESPAKARTIEKYLGKGYTVESSIGHIRDLPKSASDIPEKYKGKAWARL
GLDIENDFQPLYVVSPEKKAHVAKLRKLAQDADEIILATDDDREGESIAWHLFQELKPKV
PVRRMVFHEITKEAIQAAIAAPRQIDTNLVEAQEARRALDRLYGYEVSPVLWKKVAPKLS
AGRVQSVATRMLVQRERERMRFVSATWWDLLVTAKTAAGQSFPARLTDLAGQKLALGRDF
DPLTGRLKDGVAARLLTEAEARALADGLAGQPLTVTSAEEKPFTQRPYPPFITSTLQQEG
SRKLGFAATRTMRAAQRLYEQGYITYMRTDSTNLSEEAVKAARSQVAQMYGANYLSPQPR
VYTKKAKNAQEAHEAIRPAGSSFRTPDSLKTELSGDEWRLYDLIWKRTVACQMADARGRG
LRVRLGGKAQGGEDVALSASGRTIDFPGFLRAYVEGSDDPSAALEDRETPLPPLSEGQRV
TADGAKPEGHETQPPARFTEASLVQSLEAAGIGRPSTYASILGTIQDRGYATKKGQALVP
SWTAFATSALLEHHFGTLVDYDFTAKMEEDLDEIAGGRESRVPYLKRFYLGDQGQGMALK
PTIERQMGEIDARGIATIRVPKLEGSGVEVRVGRFGPYMERGEQKANLPEDLAPDELTAE
KAEEILARPSGDRPLGTDPDTGLPVMARAGRYGPYVTLGDTNPPARSASLFPGDDLGTLS
LERALQLLTLPRLVGSSEGEEVWAFNGKYGPYLKRGNDSRSLATHEQLFTVTLPEAEALF
LQPRFRARAAAAGPLRTFEFPGRAAIQLKDGRFGPYLTDGERNATLRKGETPENLTAERA
LEILEERGKEPKKKPGKTGATKKAAPRTGTSKTTAKAGAKKPAASKTTTKKPAVKKPAAK
AAPAKATFTWADLQSHLGVLSDPERRLVTATRGEGRKVEDVAPELGLDVKKAKGMALQAS
KKLNQAARGK
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgcccagatcctctgcccacacgctggttatcgtcgagtcgcctgccaaggcccgcacc
atcgagaagtacctcggaaaggggtacacggtggagtcgtccatcgggcacatccgtgac
ctgccgaagagcgcctcggacattcccgagaagtacaagggcaaggcctgggcgcgcctg
gggctggatatcgagaatgacttccagccgctgtacgtggtgtcgccggagaagaaggcg
cacgtggcgaagctgcgcaagctggcccaggacgccgacgagatcatcctggcgaccgac
gatgaccgtgagggcgagagcatcgcatggcacctgttccaggagttgaagccgaaggtg
ccggtgcggcgcatggtgttccacgagatcacgaaggaggccatccaggccgcgattgcc
gcgccgcgtcagatcgacacgaacctcgtggaggcgcaggaggcccgccgtgccctggac
cgcctgtacgggtacgaggtcagcccggtgctgtggaagaaggtcgcgccgaaactgtcg
gcggggcgggtgcagtcggtggcgacgcgcatgctggtgcagcgtgaacgcgagcgcatg
cggttcgtcagcgcgacgtggtgggacctgctggtcacggcgaagacggcggccgggcag
agcttcccggcccgcctgacggatctcgcggggcagaagctggcgctgggccgtgatttc
gacccgctgaccgggcgactgaaggacggcgtggccgcccgcctgctcaccgaggccgag
gcgcgcgccctggccgacgggctggccgggcagccgctgaccgtgacgagcgcggaggaa
aaacccttcacgcagcggccctacccgccgttcatcacgtccacgctgcagcaggagggc
agccgcaagctgggcttcgccgcgacccgcacgatgcgcgccgcgcagcgcctgtacgag
cagggctacatcacctatatgcgcacggactccacgaacctctccgaggaggccgtgaag
gcggcgcgctcgcaggtggcgcagatgtacggcgcgaactacctgtccccgcagccgcgc
gtgtacacgaagaaggcgaagaacgcgcaggaggcccacgaggcgatccgtccggccggg
agcagcttccgcacgcccgacagcctgaagaccgaactgtccggcgacgagtggcgcctg
tacgacctgatctggaagcgcacggtcgcctgtcagatggccgacgcgcgtggccgcgga
ctgcgcgtccgcctgggcgggaaagcgcaggggggcgaggacgtggccctgagcgcgtcg
ggccgcaccatcgacttccccggcttcctgcgcgcgtacgtggagggcagcgacgacccc
agcgccgcgctggaggaccgcgagacgcccctgccccccctgagcgagggacagcgcgtg
acggccgacggtgcgaaacccgaggggcacgagacgcagccgcccgcccgcttcacggag
gccagtctggtgcagtcgctggaggccgccgggatcgggcgtcccagcacgtacgcgagc
atcctgggcaccatccaggaccgcgggtacgccacgaagaaagggcaggcgttggtgccc
tcttggacggcgttcgccacgagcgcgctgctggaacaccacttcgggacgctggtggac
tacgacttcaccgcgaagatggaagaggacctcgacgagatcgccgggggccgcgagagc
cgcgtgccctacctgaaacgtttctacctgggggatcaggggcagggcatggcgctgaaa
cccaccatcgagcggcagatgggtgagatcgacgcgcgcggcatcgccaccatccgcgtg
ccgaaactggaggggagcggcgtggaggtccgcgtgggccgcttcgggccctacatggaa
cgcggcgagcagaaggcgaacctgcccgaggacctcgcgccggacgaactgactgccgag
aaggccgaggagatcctcgcgcggcccagcggcgaccggcccctgggcaccgacccggac
accggcctgcccgtcatggcccgcgccgggaggtacgggccttacgtgacgctgggcgac
acgaacccgccggcacgcagcgccagcctcttccccggcgacgacctgggcaccctgagc
ctggagcgcgccctgcaactcctgaccctgccccgactggtgggcagcagcgagggcgag
gaagtctgggcgttcaacggcaagtacggcccatacctgaaacgcgggaacgacagccgt
agccttgccacgcacgagcagctgttcaccgtgacgctccccgaggcggaggcgctgttc
ctgcaaccgcgcttccgggcacgtgccgccgccgccggaccgctgcgcaccttcgagttc
ccgggccgcgccgccatccagctcaaggacggccgcttcggaccgtacctgaccgacggc
gagcgcaacgccacgctgcgcaagggtgaaacaccggaaaacctgaccgccgaacgcgcc
ctggaaattctggaggaacgcggcaaggaacccaagaagaaacccggcaagaccggggcg
acgaagaaggccgcgcccaggaccggcacgagcaagaccaccgcgaaggccggggcgaag
aaacccgccgccagcaagacaaccaccaagaaaccggccgtgaagaagccagccgcgaaa
gccgcgcccgccaaagccacgttcacctgggcggacctgcaatcccacctgggcgtcctg
agcgaccccgaacgccgcctcgtgaccgccacgcgcggcgagggtcgcaaggtcgaggac
gtcgccccggaactcggcctggacgtcaagaaagccaagggcatggccctccaggccagc
aagaaactcaatcaggccgcgcgcggcaagtag
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