Deinococcus grandis: DEGR_12250
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Entry
DEGR_12250 CDS
T06640
Symbol
pdxS
Name
(GenBank) pyridoxal 5'-phosphate synthase subunit PdxS
KO
K06215
pyridoxal 5'-phosphate synthase pdxS subunit [EC:
4.3.3.6
]
Organism
dga
Deinococcus grandis
Pathway
dga00750
Vitamin B6 metabolism
dga01100
Metabolic pathways
dga01240
Biosynthesis of cofactors
Module
dga_M00916
Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:
dga00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00750 Vitamin B6 metabolism
DEGR_12250 (pdxS)
Enzymes [BR:
dga01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.3 Amine-lyases
4.3.3.6 pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
DEGR_12250 (pdxS)
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GFIT
Motif
Pfam:
SOR_SNZ
ThiG
Dus
TetR_C_27
His_biosynth
IGPS
NMO
Peptidase_S66C
Motif
Other DBs
NCBI-ProteinID:
BBN94492
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Position
1283957..1284847
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AA seq
296 aa
AA seq
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MTEATTGTPALKQGFAEMFKGGVIMDVVTADQARIAEAAGATAVMALERVPADIRKDGGV
ARMSDPKMIKEIIGAVSIPVMAKVRIGHIVEAQILQALGVDFIDESEVLTPADDQYHILK
HDFKVPFVCGAKNLGEALRRVGEGASMIRTKGEAGTGNVIEAVRHARTVLGEIKHIQARP
AEELMTVARDLQAPYELVRYVHEHGKLPVVNFAAGGVATPADAALMMHLGLDGVFVGSGI
FKSDNPERRAQAIVKAVTHFQNPEVLAEISEDLGAPMTGINIDDLIPAERLAARGW
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaagcgaccaccggtacccccgccctgaagcagggcttcgctgaaatgttcaag
ggcggcgtcatcatggacgtcgtcaccgccgatcaggcccgcatcgccgaggctgccggc
gcgaccgccgtcatggccctcgagcgcgtccccgccgatatccgcaaggacggcggcgtg
gcccgcatgagcgaccccaagatgatcaaggagatcatcggcgccgtcagcatccccgtc
atggccaaggtccgcatcgggcacatcgtggaagcgcagatcctccaggcgctcggcgtg
gacttcatcgacgagtccgaagtcctgacccccgccgacgaccagtaccacatcctcaag
cacgacttcaaggtgccgttcgtgtgcggcgccaagaacctcggcgaggccctgcgccgc
gtcggcgagggtgcgagcatgatccgcaccaagggcgaggccgggaccggcaacgtcatc
gaggccgtccgtcacgcccgcaccgtgctgggcgagatcaagcacatccaggcccgcccc
gccgaggaactcatgaccgtcgcccgcgacctccaggcgccctacgaactggtccgctac
gtgcacgagcacggcaagctgcccgtcgtgaacttcgccgccggtggcgtggccacgccc
gccgacgccgcgctgatgatgcacctgggcctggacggcgtgttcgtcggcagcggcatc
ttcaagagcgacaaccccgaacgccgcgcgcaggccatcgtgaaggccgtcacgcacttc
cagaaccccgaggtgctcgccgagatcagcgaggacctgggcgcgcccatgaccggcatc
aacatcgacgacctgattcccgccgagcgcctcgccgcgcgcggctggtaa
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