Deinococcus grandis: DEGR_29040
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Entry
DEGR_29040 CDS
T06640
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dga
Deinococcus grandis
Brite
KEGG Orthology (KO) [BR:
dga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dga03016
]
DEGR_29040 (rtcB)
Enzymes [BR:
dga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DEGR_29040 (rtcB)
Transfer RNA biogenesis [BR:
dga03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DEGR_29040 (rtcB)
Prokaryotic type
tRNA splicing ligases
DEGR_29040 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBN96171
LinkDB
All DBs
Position
2938059..2939462
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AA seq
467 aa
AA seq
DB search
MNGKHLVKLGLEKKAIALAQTAATQRETAGLTRDDILSELRAVQQNPAAYAEGGVYAPLA
AELLAQQAVLDARRGSDLRAQPLPYPTWGADLIDPGAHRQMDVAMRLPVSRAGALMPDAH
VGYGLPIGGVLATENAVIPYGVGVDIGCSMMLSVLPIQPGALRTDDATTLLLKHTRFGAG
VAFEKRDRQDHDVLHESTWQDQPILRHLYDKAATQIGTSGSGNHFVEFGTLTLPTADLGL
DPGEYLAVLSHSGSRGFGAQVAGHFTALAERHHPTLAPEAKKLAWLPLDHEDGQAYWQAM
TLAGRYALANHHLIHTRLARALNVTPLAQVSNSHNLAWKQQVGDQELIVHRKGATPAAQG
QLGLIPGSMADPGYVVRGLGHPGALSSASHGAGRQLGRKAAASTLNKKDVQAYLTTRGVT
LIGGGIDEAPQAYKRIQDVIARQDDLVNVIASFQPRVVRMDTGSEDI
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcaaacacctcgtgaaactcggcctggaaaagaaagccatcgccctcgcccag
accgccgccacccagcgcgaaaccgccggactgacccgcgacgacatcctcagcgaacta
cgcgccgtgcagcagaaccccgccgcgtacgccgagggcggcgtgtacgccccgctggcc
gccgaactcctcgcgcagcaggccgtcctcgacgcccgccggggcagcgacctgcgcgcc
cagcccctcccctaccccacctggggcgcggacctgatcgaccccggcgcgcaccgtcag
atggacgtcgccatgcgcctccccgtcagccgcgccggagcgctcatgcccgacgcgcac
gtcggttacggcctccccatcggcggggtgctcgccaccgagaacgccgtcatcccctac
ggcgtcggcgtggacatcggctgctccatgatgctctcggtcctgcccatccaaccgggc
gcgctgcgcaccgacgacgccaccaccctgctgctgaagcacacccgcttcggcgcgggc
gtcgccttcgagaaacgcgaccgccaggaccacgacgtcctgcacgagagcacctggcag
gaccagcccatcctgcgccacctgtacgacaaggccgccacgcagatcggcaccagcggc
agcggcaaccacttcgtcgaattcggcaccctcaccctccccaccgccgacctcggcctg
gaccccggcgagtacctcgccgtcctctcccacagcggcagccgcggcttcggcgcgcag
gtcgccggacacttcaccgccctcgccgaacgccaccaccccaccctcgcgccagaagcg
aaaaaactcgcatggctccccctcgaccacgaagacggacaggcgtactggcaggccatg
accctcgccggccgctacgccctcgccaaccaccacctcatccacacccgcctcgcccgc
gccctgaacgtcacgcccctcgcgcaggtcagcaacagccacaacctcgcctggaaacaa
caggtcggcgatcaggaactcatcgtgcaccgcaaaggcgccacccccgccgcccagggc
caactcggcctcatccccggcagcatggccgaccccggctacgtggtgcgcggcctcggc
caccccggcgccctgagcagcgccagccacggcgccggacgccaactcggccgcaaagcc
gccgccagcaccctcaacaaaaaagacgtccaggcgtacctcaccacgcgcggcgtcacc
ctcatcggcggcggcatcgacgaagccccacaagcgtacaaacgcatccaggacgtcatc
gcccgccaggacgacctcgtgaacgtcatcgccagcttccagccacgcgtggtccgcatg
gataccgggagtgaggacatctga
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