Deinococcus geothermalis: Dgeo_0032
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Entry
Dgeo_0032 CDS
T00353
Name
(GenBank) ribonuclease II, VacB-like protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dge
Deinococcus geothermalis
Brite
KEGG Orthology (KO) [BR:
dge00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dge03016
]
Dgeo_0032
Enzymes [BR:
dge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Dgeo_0032
Transfer RNA biogenesis [BR:
dge03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Dgeo_0032
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
ABF44335
UniProt:
Q1J2E9
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All DBs
Position
29584..30993
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AA seq
469 aa
AA seq
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MTAPFPALPELTPAQRAEVELVARGKQEKSRTLRDLAQPETPEAAHALLLRLGLWDEART
PYAERLGAALTPVTLAVPDFPEEARLDLTQLPAYAIDDEGNRDPDDAVGIEVLGGGLTRL
WVHVADVAALVPAGSPLDEEARARGATLYLPDRTIGMLPDALVERAGLGLSEITPALSIA
LDLDEEGNADAVEVQLTRVRVQRLTYTQAQERLSAGEEPFVTLARLARASRALREGEGAL
TIDLPEVRVKADDRGATVTPLPKPEMRAVVQECMTLAGWAAAIYADDHGLPLPFATQDAP
TRDVPGDTLPAHWARRKTLARTRFQPAPGPHHGMGLDLYAQATSPLRRYLDLVVHQQLRA
HLTGAEPLSGKDVAARVAQAQMNADATRQAERLSRKHHTLRFVAAQPERVWDAVVVERRG
PQATLLLPELALDLPFSAPVSVGTALKVRLTDVNLPALTVRARAVENPA
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgactgctcctttccccgccctcccggaactgacgcctgcgcagcgcgcggaggtggaa
ctcgtcgcccgcggcaagcaggagaaatcccgtaccctgcgcgatctggcccagcccgag
acacccgaggccgcccatgccctgctgctgcggctggggctgtgggatgaggcccgaacg
ccctacgccgagcgcctaggcgcggcattgacgcccgtaacgctggcggtgcccgacttt
ccagaggaggcaaggctcgacctgacccagcttcccgcctatgccatcgacgacgagggc
aaccgcgaccctgacgacgcggtgggcatcgaggtgttgggtggcggtctgacccggctg
tgggtgcatgtggcggacgtggcggcccttgtgccggcgggcagcccgctggacgaggag
gcccgcgcgcgtggcgcgacactctacctgcccgaccggacgatcggaatgctgccggac
gcgctggtggagcgtgcggggttgggtctgagcgagatcacgccggccctttccatcgcg
cttgatcttgacgaggagggcaacgcggacgcagtggaggtgcagcttacgcgggtgcgc
gtccagcgcctcacctacacccaggcgcaggaacggctctcggcgggcgaggagcccttc
gttacgctcgcccgtctggcccgtgccagccgcgcgctgcgcgagggggaaggcgcgctc
accatcgacctgcccgaggtgcgggtgaaggccgatgaccggggcgccaccgtgaccccc
cttcccaagcccgagatgcgcgccgtggtgcaggagtgcatgacgctggcaggctgggcc
gccgcgatctacgccgacgaccacggtcttcccctgccctttgccacacaggacgccccc
acacgggacgtgccgggggacacgctgcctgcacactgggcccgccgcaagacgctggcg
cgcacccgttttcagcccgcgccggggccgcaccatggcatgggcctggacctctacgcg
caggcgaccagcccgctgcggcgctacctggacctggtggtgcatcagcagctgcgggca
cacctgaccggcgctgaacccctcagcggcaaggacgtcgccgcccgcgtcgctcaggcc
cagatgaacgccgacgccacccgtcaggcggagcgcctcagccgcaaacatcacaccctg
cgctttgtggctgcgcagccggagcgggtgtgggacgcggtggtggtggagcggcgcggc
ccgcaggccaccctgctgcttcccgagctggctctcgacctgcccttcagcgcgccggtt
tcggtggggaccgctctgaaggtgcggctcaccgacgtgaacctgcctgccctgacggtg
cgggcgcgggcagtggagaacccggcttaa
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